Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18455 and CSW01_18460 overlap by 15 nucleotides CSW01_18460 and CSW01_18465 are separated by 195 nucleotides CSW01_18465 and CSW01_18470 are separated by 240 nucleotides CSW01_18470 and CSW01_18475 are separated by 530 nucleotides
CSW01_18455: CSW01_18455 - hemagglutinin/proteinase, at 815,545 to 817,374
_18455
CSW01_18460: CSW01_18460 - hypothetical protein, at 817,360 to 817,599
_18460
CSW01_18465: CSW01_18465 - outer membrane protein W, at 817,795 to 818,448
_18465
CSW01_18470: CSW01_18470 - hypothetical protein, at 818,689 to 818,871
_18470
CSW01_18475: CSW01_18475 - D-alanyl-D-alanine endopeptidase, at 819,402 to 820,352
_18475
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 816.811 kb on + strand, within CSW01_18455 at 816.819 kb on + strand, within CSW01_18455 at 816.828 kb on + strand, within CSW01_18455 at 816.907 kb on - strand, within CSW01_18455 at 816.926 kb on - strand, within CSW01_18455 at 816.942 kb on - strand, within CSW01_18455 at 817.007 kb on - strand, within CSW01_18455 at 817.030 kb on - strand, within CSW01_18455 at 817.044 kb on - strand, within CSW01_18455 at 817.078 kb on + strand, within CSW01_18455 at 817.086 kb on - strand, within CSW01_18455 at 817.230 kb on + strand at 817.230 kb on + strand at 817.235 kb on + strand at 817.235 kb on + strand at 817.243 kb on - strand at 817.338 kb on + strand at 817.341 kb on - strand at 817.341 kb on - strand at 817.346 kb on - strand at 817.414 kb on - strand, within CSW01_18460 at 817.414 kb on - strand, within CSW01_18460 at 817.464 kb on + strand, within CSW01_18460 at 817.677 kb on + strand at 817.871 kb on + strand, within CSW01_18465 at 817.871 kb on + strand, within CSW01_18465 at 817.916 kb on - strand, within CSW01_18465 at 817.997 kb on - strand, within CSW01_18465 at 818.059 kb on - strand, within CSW01_18465 at 818.064 kb on - strand, within CSW01_18465 at 818.073 kb on - strand, within CSW01_18465 at 818.157 kb on + strand, within CSW01_18465 at 818.162 kb on + strand, within CSW01_18465 at 818.170 kb on - strand, within CSW01_18465 at 818.175 kb on - strand, within CSW01_18465 at 818.175 kb on - strand, within CSW01_18465 at 818.193 kb on - strand, within CSW01_18465 at 818.223 kb on + strand, within CSW01_18465 at 818.231 kb on - strand, within CSW01_18465 at 818.231 kb on - strand, within CSW01_18465 at 818.248 kb on + strand, within CSW01_18465 at 818.255 kb on - strand, within CSW01_18465 at 818.257 kb on - strand, within CSW01_18465 at 818.259 kb on + strand, within CSW01_18465 at 818.260 kb on + strand, within CSW01_18465 at 818.267 kb on - strand, within CSW01_18465 at 818.306 kb on - strand, within CSW01_18465 at 818.308 kb on + strand, within CSW01_18465 at 818.308 kb on - strand, within CSW01_18465 at 818.343 kb on - strand, within CSW01_18465 at 818.355 kb on - strand, within CSW01_18465 at 818.364 kb on + strand, within CSW01_18465 at 818.364 kb on + strand, within CSW01_18465 at 818.372 kb on - strand, within CSW01_18465 at 818.404 kb on + strand at 818.404 kb on + strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.412 kb on - strand at 818.475 kb on + strand at 818.502 kb on - strand at 818.629 kb on - strand at 818.738 kb on + strand, within CSW01_18470 at 818.829 kb on - strand, within CSW01_18470 at 818.867 kb on + strand at 818.873 kb on - strand at 819.025 kb on - strand at 819.078 kb on + strand at 819.213 kb on + strand at 819.220 kb on - strand at 819.223 kb on - strand at 819.260 kb on - strand at 819.267 kb on + strand at 819.301 kb on - strand at 819.325 kb on + strand at 819.325 kb on + strand at 819.325 kb on + strand at 819.333 kb on - strand at 819.333 kb on - strand at 819.333 kb on - strand at 819.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 816,811 + CSW01_18455 0.69 +0.6 816,819 + CSW01_18455 0.70 -2.0 816,828 + CSW01_18455 0.70 -2.0 816,907 - CSW01_18455 0.74 +1.1 816,926 - CSW01_18455 0.75 +0.2 816,942 - CSW01_18455 0.76 -1.3 817,007 - CSW01_18455 0.80 +1.1 817,030 - CSW01_18455 0.81 -1.7 817,044 - CSW01_18455 0.82 +1.1 817,078 + CSW01_18455 0.84 +1.4 817,086 - CSW01_18455 0.84 +0.4 817,230 + -2.5 817,230 + -0.5 817,235 + +0.9 817,235 + +0.2 817,243 - -2.9 817,338 + -2.3 817,341 - -0.4 817,341 - -0.3 817,346 - +0.8 817,414 - CSW01_18460 0.23 -3.3 817,414 - CSW01_18460 0.23 -2.2 817,464 + CSW01_18460 0.43 +1.3 817,677 + +0.2 817,871 + CSW01_18465 0.12 +0.2 817,871 + CSW01_18465 0.12 -1.0 817,916 - CSW01_18465 0.19 -0.1 817,997 - CSW01_18465 0.31 +0.4 818,059 - CSW01_18465 0.40 +0.3 818,064 - CSW01_18465 0.41 +0.9 818,073 - CSW01_18465 0.43 -1.7 818,157 + CSW01_18465 0.55 +0.9 818,162 + CSW01_18465 0.56 -0.7 818,170 - CSW01_18465 0.57 +1.3 818,175 - CSW01_18465 0.58 +1.1 818,175 - CSW01_18465 0.58 +0.6 818,193 - CSW01_18465 0.61 +3.1 818,223 + CSW01_18465 0.65 +1.0 818,231 - CSW01_18465 0.67 -0.4 818,231 - CSW01_18465 0.67 +0.9 818,248 + CSW01_18465 0.69 -2.8 818,255 - CSW01_18465 0.70 -0.8 818,257 - CSW01_18465 0.71 +0.5 818,259 + CSW01_18465 0.71 +0.4 818,260 + CSW01_18465 0.71 -1.3 818,267 - CSW01_18465 0.72 +0.8 818,306 - CSW01_18465 0.78 +0.7 818,308 + CSW01_18465 0.78 -1.0 818,308 - CSW01_18465 0.78 +0.5 818,343 - CSW01_18465 0.84 +1.1 818,355 - CSW01_18465 0.86 -0.0 818,364 + CSW01_18465 0.87 -0.6 818,364 + CSW01_18465 0.87 -0.5 818,372 - CSW01_18465 0.88 -0.1 818,404 + -1.0 818,404 + +0.2 818,412 - +0.9 818,412 - +0.5 818,412 - -2.4 818,412 - -0.7 818,475 + +0.0 818,502 - -1.1 818,629 - +0.6 818,738 + CSW01_18470 0.27 +0.9 818,829 - CSW01_18470 0.77 -0.2 818,867 + +2.2 818,873 - +0.8 819,025 - +0.4 819,078 + +1.0 819,213 + -0.3 819,220 - +1.1 819,223 - -1.1 819,260 - -0.5 819,267 + +0.2 819,301 - -0.8 819,325 + -0.5 819,325 + -0.4 819,325 + +0.4 819,333 - +0.1 819,333 - +0.3 819,333 - -0.4 819,440 - +2.7
Or see this region's nucleotide sequence