Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18390

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18385 and CSW01_18390 are separated by 159 nucleotidesCSW01_18390 and CSW01_18395 are separated by 0 nucleotides CSW01_18385: CSW01_18385 - DNA-binding response regulator, at 799,307 to 800,092 _18385 CSW01_18390: CSW01_18390 - sensor histidine kinase, at 800,252 to 801,331 _18390 CSW01_18395: CSW01_18395 - hypothetical protein, at 801,332 to 802,576 _18395 Position (kb) 800 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 799.325 kb on + strandat 799.325 kb on + strandat 799.333 kb on - strandat 799.333 kb on - strandat 799.333 kb on - strandat 799.349 kb on + strandat 799.351 kb on + strandat 799.437 kb on - strand, within CSW01_18385at 799.456 kb on + strand, within CSW01_18385at 799.579 kb on - strand, within CSW01_18385at 799.648 kb on - strand, within CSW01_18385at 799.650 kb on - strand, within CSW01_18385at 799.854 kb on + strand, within CSW01_18385at 799.935 kb on + strand, within CSW01_18385at 799.953 kb on - strand, within CSW01_18385at 799.953 kb on - strand, within CSW01_18385at 799.972 kb on - strand, within CSW01_18385at 799.993 kb on - strand, within CSW01_18385at 800.004 kb on + strand, within CSW01_18385at 800.004 kb on + strand, within CSW01_18385at 800.014 kb on - strandat 800.016 kb on + strandat 800.024 kb on - strandat 800.081 kb on - strandat 800.081 kb on - strandat 800.081 kb on - strandat 800.081 kb on - strandat 800.250 kb on + strandat 800.265 kb on + strandat 800.330 kb on - strandat 800.372 kb on + strand, within CSW01_18390at 800.385 kb on + strand, within CSW01_18390at 800.385 kb on + strand, within CSW01_18390at 800.428 kb on - strand, within CSW01_18390at 800.493 kb on - strand, within CSW01_18390at 800.495 kb on + strand, within CSW01_18390at 800.539 kb on - strand, within CSW01_18390at 800.553 kb on - strand, within CSW01_18390at 800.553 kb on - strand, within CSW01_18390at 800.563 kb on - strand, within CSW01_18390at 800.598 kb on - strand, within CSW01_18390at 800.637 kb on + strand, within CSW01_18390at 800.645 kb on - strand, within CSW01_18390at 800.645 kb on - strand, within CSW01_18390at 800.680 kb on + strand, within CSW01_18390at 800.729 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.803 kb on - strand, within CSW01_18390at 800.883 kb on + strand, within CSW01_18390at 801.068 kb on + strand, within CSW01_18390at 801.072 kb on - strand, within CSW01_18390at 801.072 kb on - strand, within CSW01_18390at 801.104 kb on + strand, within CSW01_18390at 801.104 kb on + strand, within CSW01_18390at 801.149 kb on + strand, within CSW01_18390at 801.272 kb on - strandat 801.272 kb on - strandat 801.441 kb on - strandat 801.441 kb on - strandat 801.443 kb on + strandat 801.451 kb on - strandat 801.463 kb on - strand, within CSW01_18395at 801.463 kb on - strand, within CSW01_18395at 801.502 kb on + strand, within CSW01_18395at 801.512 kb on + strand, within CSW01_18395at 801.545 kb on - strand, within CSW01_18395at 801.579 kb on + strand, within CSW01_18395at 801.582 kb on - strand, within CSW01_18395at 801.605 kb on + strand, within CSW01_18395at 801.626 kb on + strand, within CSW01_18395at 801.634 kb on - strand, within CSW01_18395at 801.659 kb on + strand, within CSW01_18395at 801.722 kb on + strand, within CSW01_18395at 801.737 kb on + strand, within CSW01_18395at 801.751 kb on + strand, within CSW01_18395at 801.769 kb on - strand, within CSW01_18395at 801.776 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.910 kb on - strand, within CSW01_18395at 801.929 kb on + strand, within CSW01_18395at 801.944 kb on - strand, within CSW01_18395at 802.006 kb on + strand, within CSW01_18395at 802.009 kb on - strand, within CSW01_18395at 802.060 kb on + strand, within CSW01_18395at 802.095 kb on + strand, within CSW01_18395at 802.126 kb on + strand, within CSW01_18395at 802.158 kb on + strand, within CSW01_18395at 802.199 kb on + strand, within CSW01_18395at 802.206 kb on - strand, within CSW01_18395at 802.244 kb on + strand, within CSW01_18395at 802.278 kb on + strand, within CSW01_18395

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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799,325 + -0.4
799,325 + +0.5
799,333 - +0.7
799,333 - +1.2
799,333 - -2.3
799,349 + +0.8
799,351 + -1.1
799,437 - CSW01_18385 0.17 +0.8
799,456 + CSW01_18385 0.19 -0.5
799,579 - CSW01_18385 0.35 -2.6
799,648 - CSW01_18385 0.43 -0.0
799,650 - CSW01_18385 0.44 -0.5
799,854 + CSW01_18385 0.70 -0.8
799,935 + CSW01_18385 0.80 -2.4
799,953 - CSW01_18385 0.82 +0.3
799,953 - CSW01_18385 0.82 +1.3
799,972 - CSW01_18385 0.85 -2.1
799,993 - CSW01_18385 0.87 -0.1
800,004 + CSW01_18385 0.89 -3.2
800,004 + CSW01_18385 0.89 +0.4
800,014 - -1.3
800,016 + +1.1
800,024 - -1.5
800,081 - +0.7
800,081 - -0.0
800,081 - +0.4
800,081 - -1.2
800,250 + -1.4
800,265 + +0.8
800,330 - -0.3
800,372 + CSW01_18390 0.11 -0.1
800,385 + CSW01_18390 0.12 -1.5
800,385 + CSW01_18390 0.12 -1.0
800,428 - CSW01_18390 0.16 +0.7
800,493 - CSW01_18390 0.22 +1.0
800,495 + CSW01_18390 0.23 +0.2
800,539 - CSW01_18390 0.27 +0.4
800,553 - CSW01_18390 0.28 +0.3
800,553 - CSW01_18390 0.28 -3.4
800,563 - CSW01_18390 0.29 +0.2
800,598 - CSW01_18390 0.32 +0.5
800,637 + CSW01_18390 0.36 +0.9
800,645 - CSW01_18390 0.36 -2.2
800,645 - CSW01_18390 0.36 +0.3
800,680 + CSW01_18390 0.40 +1.9
800,729 - CSW01_18390 0.44 -0.5
800,748 - CSW01_18390 0.46 +0.3
800,748 - CSW01_18390 0.46 -0.1
800,748 - CSW01_18390 0.46 +0.7
800,803 - CSW01_18390 0.51 -1.4
800,883 + CSW01_18390 0.58 +0.7
801,068 + CSW01_18390 0.76 +0.2
801,072 - CSW01_18390 0.76 +0.8
801,072 - CSW01_18390 0.76 +0.3
801,104 + CSW01_18390 0.79 -1.6
801,104 + CSW01_18390 0.79 +0.0
801,149 + CSW01_18390 0.83 +1.9
801,272 - +0.8
801,272 - +0.6
801,441 - +0.4
801,441 - +2.3
801,443 + -0.7
801,451 - -0.7
801,463 - CSW01_18395 0.11 -0.6
801,463 - CSW01_18395 0.11 +0.9
801,502 + CSW01_18395 0.14 +0.5
801,512 + CSW01_18395 0.14 +1.1
801,545 - CSW01_18395 0.17 -0.2
801,579 + CSW01_18395 0.20 +0.8
801,582 - CSW01_18395 0.20 +0.0
801,605 + CSW01_18395 0.22 +0.9
801,626 + CSW01_18395 0.24 -2.9
801,634 - CSW01_18395 0.24 +0.4
801,659 + CSW01_18395 0.26 -0.2
801,722 + CSW01_18395 0.31 -0.9
801,737 + CSW01_18395 0.33 -1.4
801,751 + CSW01_18395 0.34 -2.7
801,769 - CSW01_18395 0.35 +0.7
801,776 + CSW01_18395 0.36 +0.3
801,874 + CSW01_18395 0.44 -0.6
801,874 + CSW01_18395 0.44 +1.2
801,884 + CSW01_18395 0.44 -0.9
801,884 + CSW01_18395 0.44 +1.7
801,910 - CSW01_18395 0.46 +0.6
801,929 + CSW01_18395 0.48 -2.8
801,944 - CSW01_18395 0.49 +3.1
802,006 + CSW01_18395 0.54 -0.4
802,009 - CSW01_18395 0.54 +1.4
802,060 + CSW01_18395 0.58 -3.4
802,095 + CSW01_18395 0.61 +2.1
802,126 + CSW01_18395 0.64 -1.3
802,158 + CSW01_18395 0.66 -0.2
802,199 + CSW01_18395 0.70 +0.1
802,206 - CSW01_18395 0.70 -1.5
802,244 + CSW01_18395 0.73 +1.3
802,278 + CSW01_18395 0.76 -1.3

Or see this region's nucleotide sequence