Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18100

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18095 and CSW01_18100 are separated by 168 nucleotidesCSW01_18100 and CSW01_18105 are separated by 125 nucleotides CSW01_18095: CSW01_18095 - enoyl-[acyl-carrier-protein] reductase FabV, at 725,763 to 726,971 _18095 CSW01_18100: CSW01_18100 - sensor domain-containing phosphodiesterase, at 727,140 to 729,023 _18100 CSW01_18105: CSW01_18105 - isopentenyl-diphosphate delta-isomerase, at 729,149 to 730,798 _18105 Position (kb) 727 728 729 730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 726.262 kb on + strand, within CSW01_18095at 726.276 kb on + strand, within CSW01_18095at 726.460 kb on + strand, within CSW01_18095at 726.468 kb on - strand, within CSW01_18095at 726.503 kb on - strand, within CSW01_18095at 726.503 kb on - strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.653 kb on + strand, within CSW01_18095at 726.661 kb on - strand, within CSW01_18095at 726.661 kb on - strand, within CSW01_18095at 726.696 kb on + strand, within CSW01_18095at 726.762 kb on + strand, within CSW01_18095at 726.780 kb on - strand, within CSW01_18095at 726.807 kb on + strand, within CSW01_18095at 727.007 kb on + strandat 727.015 kb on - strandat 727.039 kb on + strandat 727.060 kb on - strandat 727.107 kb on + strandat 727.237 kb on + strandat 727.243 kb on + strandat 727.306 kb on + strandat 727.344 kb on + strand, within CSW01_18100at 727.352 kb on - strand, within CSW01_18100at 727.352 kb on - strand, within CSW01_18100at 727.415 kb on + strand, within CSW01_18100at 727.426 kb on + strand, within CSW01_18100at 727.429 kb on - strand, within CSW01_18100at 727.429 kb on - strand, within CSW01_18100at 727.442 kb on + strand, within CSW01_18100at 727.597 kb on + strand, within CSW01_18100at 727.690 kb on - strand, within CSW01_18100at 727.720 kb on + strand, within CSW01_18100at 727.720 kb on + strand, within CSW01_18100at 727.758 kb on - strand, within CSW01_18100at 727.758 kb on - strand, within CSW01_18100at 727.793 kb on - strand, within CSW01_18100at 727.794 kb on - strand, within CSW01_18100at 727.902 kb on - strand, within CSW01_18100at 727.909 kb on - strand, within CSW01_18100at 727.909 kb on - strand, within CSW01_18100at 727.937 kb on + strand, within CSW01_18100at 727.967 kb on - strand, within CSW01_18100at 728.108 kb on - strand, within CSW01_18100at 728.109 kb on + strand, within CSW01_18100at 728.116 kb on - strand, within CSW01_18100at 728.127 kb on - strand, within CSW01_18100at 728.127 kb on - strand, within CSW01_18100at 728.162 kb on + strand, within CSW01_18100at 728.169 kb on + strand, within CSW01_18100at 728.314 kb on - strand, within CSW01_18100at 728.436 kb on + strand, within CSW01_18100at 728.444 kb on - strand, within CSW01_18100at 728.539 kb on + strand, within CSW01_18100at 728.547 kb on - strand, within CSW01_18100at 728.547 kb on - strand, within CSW01_18100at 728.576 kb on + strand, within CSW01_18100at 728.576 kb on + strand, within CSW01_18100at 728.597 kb on + strand, within CSW01_18100at 728.597 kb on + strand, within CSW01_18100at 728.605 kb on - strand, within CSW01_18100at 728.606 kb on - strand, within CSW01_18100at 728.695 kb on + strand, within CSW01_18100at 728.740 kb on - strand, within CSW01_18100at 728.777 kb on + strand, within CSW01_18100at 728.824 kb on - strand, within CSW01_18100at 728.850 kb on - strandat 728.893 kb on - strandat 728.933 kb on + strandat 728.933 kb on + strandat 728.933 kb on + strandat 728.941 kb on - strandat 728.941 kb on - strandat 728.970 kb on + strandat 728.978 kb on - strandat 728.978 kb on - strandat 729.020 kb on - strandat 729.034 kb on + strandat 729.034 kb on + strandat 729.039 kb on + strandat 729.039 kb on + strandat 729.039 kb on + strandat 729.042 kb on - strandat 729.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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726,262 + CSW01_18095 0.41 -3.0
726,276 + CSW01_18095 0.42 -0.5
726,460 + CSW01_18095 0.58 -1.6
726,468 - CSW01_18095 0.58 -0.4
726,503 - CSW01_18095 0.61 +0.8
726,503 - CSW01_18095 0.61 -0.2
726,653 + CSW01_18095 0.74 +0.9
726,653 + CSW01_18095 0.74 +0.8
726,653 + CSW01_18095 0.74 -0.6
726,661 - CSW01_18095 0.74 +0.7
726,661 - CSW01_18095 0.74 +1.7
726,696 + CSW01_18095 0.77 -2.5
726,762 + CSW01_18095 0.83 +1.3
726,780 - CSW01_18095 0.84 -1.2
726,807 + CSW01_18095 0.86 -0.3
727,007 + +0.3
727,015 - +0.7
727,039 + -0.1
727,060 - -0.9
727,107 + +1.8
727,237 + +1.7
727,243 + -2.0
727,306 + -1.7
727,344 + CSW01_18100 0.11 +1.6
727,352 - CSW01_18100 0.11 -0.9
727,352 - CSW01_18100 0.11 +0.1
727,415 + CSW01_18100 0.15 -0.5
727,426 + CSW01_18100 0.15 -0.0
727,429 - CSW01_18100 0.15 +3.6
727,429 - CSW01_18100 0.15 -0.7
727,442 + CSW01_18100 0.16 -1.1
727,597 + CSW01_18100 0.24 +0.6
727,690 - CSW01_18100 0.29 -0.0
727,720 + CSW01_18100 0.31 +1.3
727,720 + CSW01_18100 0.31 +0.3
727,758 - CSW01_18100 0.33 +0.7
727,758 - CSW01_18100 0.33 +0.6
727,793 - CSW01_18100 0.35 +0.1
727,794 - CSW01_18100 0.35 +1.4
727,902 - CSW01_18100 0.40 +0.8
727,909 - CSW01_18100 0.41 -0.9
727,909 - CSW01_18100 0.41 +1.1
727,937 + CSW01_18100 0.42 +0.3
727,967 - CSW01_18100 0.44 +1.6
728,108 - CSW01_18100 0.51 -3.0
728,109 + CSW01_18100 0.51 -0.0
728,116 - CSW01_18100 0.52 +0.9
728,127 - CSW01_18100 0.52 -1.2
728,127 - CSW01_18100 0.52 -2.6
728,162 + CSW01_18100 0.54 +0.6
728,169 + CSW01_18100 0.55 -1.2
728,314 - CSW01_18100 0.62 -0.0
728,436 + CSW01_18100 0.69 +0.7
728,444 - CSW01_18100 0.69 -0.2
728,539 + CSW01_18100 0.74 +0.2
728,547 - CSW01_18100 0.75 -0.7
728,547 - CSW01_18100 0.75 -0.5
728,576 + CSW01_18100 0.76 +0.5
728,576 + CSW01_18100 0.76 +0.9
728,597 + CSW01_18100 0.77 -0.5
728,597 + CSW01_18100 0.77 +0.7
728,605 - CSW01_18100 0.78 +0.4
728,606 - CSW01_18100 0.78 +0.1
728,695 + CSW01_18100 0.83 +1.0
728,740 - CSW01_18100 0.85 -4.5
728,777 + CSW01_18100 0.87 +0.4
728,824 - CSW01_18100 0.89 +0.9
728,850 - +0.5
728,893 - +1.0
728,933 + +1.5
728,933 + -0.4
728,933 + +2.2
728,941 - -0.5
728,941 - -0.4
728,970 + -0.8
728,978 - -0.5
728,978 - +1.1
729,020 - -0.4
729,034 + +0.4
729,034 + +0.5
729,039 + +0.6
729,039 + -2.4
729,039 + -0.4
729,042 - -0.9
729,042 - +2.0

Or see this region's nucleotide sequence