Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18075

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18070 and CSW01_18075 are separated by 108 nucleotidesCSW01_18075 and CSW01_18080 are separated by 388 nucleotides CSW01_18070: CSW01_18070 - FAD-dependent oxidoreductase, at 718,857 to 720,290 _18070 CSW01_18075: CSW01_18075 - nucleotide sugar dehydrogenase, at 720,399 to 721,565 _18075 CSW01_18080: CSW01_18080 - ABC transporter permease, at 721,954 to 724,401 _18080 Position (kb) 720 721 722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 719.483 kb on - strand, within CSW01_18070at 719.493 kb on - strand, within CSW01_18070at 719.493 kb on - strand, within CSW01_18070at 719.644 kb on + strand, within CSW01_18070at 719.682 kb on + strand, within CSW01_18070at 719.682 kb on + strand, within CSW01_18070at 719.696 kb on - strand, within CSW01_18070at 719.737 kb on - strand, within CSW01_18070at 719.737 kb on - strand, within CSW01_18070at 719.769 kb on - strand, within CSW01_18070at 719.782 kb on - strand, within CSW01_18070at 719.782 kb on - strand, within CSW01_18070at 719.865 kb on - strand, within CSW01_18070at 719.910 kb on - strand, within CSW01_18070at 720.026 kb on - strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.049 kb on + strand, within CSW01_18070at 720.099 kb on - strand, within CSW01_18070at 720.162 kb on + strandat 720.162 kb on + strandat 720.188 kb on + strandat 720.196 kb on - strandat 720.309 kb on - strandat 720.349 kb on - strandat 720.386 kb on - strandat 720.386 kb on - strandat 720.405 kb on - strandat 720.416 kb on + strandat 720.493 kb on + strandat 720.493 kb on + strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.557 kb on - strand, within CSW01_18075at 720.594 kb on - strand, within CSW01_18075at 720.755 kb on - strand, within CSW01_18075at 720.860 kb on + strand, within CSW01_18075at 721.110 kb on - strand, within CSW01_18075at 721.121 kb on + strand, within CSW01_18075at 721.195 kb on + strand, within CSW01_18075at 721.226 kb on + strand, within CSW01_18075at 721.234 kb on - strand, within CSW01_18075at 721.392 kb on + strand, within CSW01_18075at 721.401 kb on - strand, within CSW01_18075at 721.462 kb on + strandat 721.465 kb on - strandat 721.468 kb on - strandat 721.468 kb on - strandat 721.574 kb on + strandat 721.864 kb on - strandat 721.864 kb on - strandat 721.870 kb on + strandat 721.870 kb on + strandat 721.891 kb on + strandat 721.909 kb on - strandat 722.046 kb on + strandat 722.046 kb on + strandat 722.054 kb on - strandat 722.060 kb on + strandat 722.060 kb on + strandat 722.068 kb on - strandat 722.118 kb on + strandat 722.143 kb on + strandat 722.152 kb on - strandat 722.172 kb on - strandat 722.195 kb on - strandat 722.216 kb on - strand, within CSW01_18080at 722.253 kb on + strand, within CSW01_18080at 722.255 kb on - strand, within CSW01_18080at 722.255 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.322 kb on - strand, within CSW01_18080at 722.433 kb on - strand, within CSW01_18080at 722.495 kb on - strand, within CSW01_18080

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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719,483 - CSW01_18070 0.44 -2.5
719,493 - CSW01_18070 0.44 +0.4
719,493 - CSW01_18070 0.44 -1.1
719,644 + CSW01_18070 0.55 -2.5
719,682 + CSW01_18070 0.58 +0.2
719,682 + CSW01_18070 0.58 -1.2
719,696 - CSW01_18070 0.59 +0.1
719,737 - CSW01_18070 0.61 +2.2
719,737 - CSW01_18070 0.61 +0.4
719,769 - CSW01_18070 0.64 +0.8
719,782 - CSW01_18070 0.65 +0.4
719,782 - CSW01_18070 0.65 +0.3
719,865 - CSW01_18070 0.70 +0.2
719,910 - CSW01_18070 0.73 -0.2
720,026 - CSW01_18070 0.82 -2.5
720,035 + CSW01_18070 0.82 +0.5
720,035 + CSW01_18070 0.82 -1.3
720,035 + CSW01_18070 0.82 +0.2
720,043 - CSW01_18070 0.83 -0.2
720,043 - CSW01_18070 0.83 -2.2
720,043 - CSW01_18070 0.83 +1.3
720,043 - CSW01_18070 0.83 +0.2
720,049 + CSW01_18070 0.83 -2.1
720,099 - CSW01_18070 0.87 +1.0
720,162 + -0.6
720,162 + -2.2
720,188 + +0.6
720,196 - +0.2
720,309 - +0.9
720,349 - -0.5
720,386 - -3.0
720,386 - +0.7
720,405 - +1.6
720,416 + +1.0
720,493 + -2.8
720,493 + -0.2
720,501 - -1.0
720,501 - -2.8
720,501 - +0.2
720,501 - -0.4
720,557 - CSW01_18075 0.14 -0.7
720,594 - CSW01_18075 0.17 -1.4
720,755 - CSW01_18075 0.31 +0.7
720,860 + CSW01_18075 0.40 -2.8
721,110 - CSW01_18075 0.61 +0.6
721,121 + CSW01_18075 0.62 +0.8
721,195 + CSW01_18075 0.68 +0.5
721,226 + CSW01_18075 0.71 -0.9
721,234 - CSW01_18075 0.72 +1.4
721,392 + CSW01_18075 0.85 +0.2
721,401 - CSW01_18075 0.86 +0.9
721,462 + +0.8
721,465 - -1.2
721,468 - -1.1
721,468 - -1.4
721,574 + +0.3
721,864 - -2.1
721,864 - -1.1
721,870 + -0.7
721,870 + -1.1
721,891 + -0.4
721,909 - -0.9
722,046 + +0.2
722,046 + +0.3
722,054 - -2.1
722,060 + +0.2
722,060 + -1.2
722,068 - -0.2
722,118 + +0.6
722,143 + -0.9
722,152 - -0.5
722,172 - +0.8
722,195 - +0.1
722,216 - CSW01_18080 0.11 -1.0
722,253 + CSW01_18080 0.12 -0.7
722,255 - CSW01_18080 0.12 -1.6
722,255 - CSW01_18080 0.12 +0.4
722,261 - CSW01_18080 0.13 +1.4
722,261 - CSW01_18080 0.13 -1.8
722,261 - CSW01_18080 0.13 -2.2
722,261 - CSW01_18080 0.13 -3.9
722,322 - CSW01_18080 0.15 -1.6
722,433 - CSW01_18080 0.20 -2.4
722,495 - CSW01_18080 0.22 -0.1

Or see this region's nucleotide sequence