Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18025

Experiment: ICP3_phage_4.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18020 and CSW01_18025 are separated by 36 nucleotidesCSW01_18025 and CSW01_18030 are separated by 36 nucleotidesCSW01_18030 and CSW01_18035 are separated by 363 nucleotides CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901 _18020 CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519 _18025 CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675 _18030 CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241 _18035 Position (kb) 710 711 712Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 710.181 kb on - strand, within CSW01_18020at 710.254 kb on + strand, within CSW01_18020at 710.324 kb on + strand, within CSW01_18020at 710.379 kb on - strand, within CSW01_18020at 710.390 kb on - strand, within CSW01_18020at 710.428 kb on + strand, within CSW01_18020at 710.430 kb on + strand, within CSW01_18020at 710.567 kb on + strand, within CSW01_18020at 710.582 kb on - strand, within CSW01_18020at 710.605 kb on + strand, within CSW01_18020at 710.613 kb on - strand, within CSW01_18020at 710.682 kb on + strand, within CSW01_18020at 710.843 kb on + strandat 710.892 kb on + strandat 710.958 kb on - strandat 711.016 kb on - strand, within CSW01_18025at 711.018 kb on + strand, within CSW01_18025at 711.019 kb on + strand, within CSW01_18025at 711.026 kb on - strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.069 kb on + strand, within CSW01_18025at 711.074 kb on + strand, within CSW01_18025at 711.079 kb on + strand, within CSW01_18025at 711.082 kb on - strand, within CSW01_18025at 711.100 kb on + strand, within CSW01_18025at 711.124 kb on + strand, within CSW01_18025at 711.199 kb on + strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.260 kb on - strand, within CSW01_18025at 711.285 kb on + strand, within CSW01_18025at 711.372 kb on + strand, within CSW01_18025at 711.385 kb on + strand, within CSW01_18025at 711.587 kb on - strand, within CSW01_18030at 711.637 kb on - strand, within CSW01_18030at 711.639 kb on + strand, within CSW01_18030at 711.647 kb on - strand, within CSW01_18030at 711.683 kb on - strandat 711.683 kb on - strandat 711.710 kb on + strandat 711.737 kb on + strandat 711.761 kb on - strandat 711.767 kb on + strandat 711.817 kb on - strandat 712.284 kb on - strand, within CSW01_18035at 712.471 kb on - strand, within CSW01_18035at 712.500 kb on + strand, within CSW01_18035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
remove
710,181 - CSW01_18020 0.43 +0.4
710,254 + CSW01_18020 0.49 -0.1
710,324 + CSW01_18020 0.54 +1.9
710,379 - CSW01_18020 0.59 +0.3
710,390 - CSW01_18020 0.60 -1.8
710,428 + CSW01_18020 0.63 -1.2
710,430 + CSW01_18020 0.63 +2.1
710,567 + CSW01_18020 0.74 -1.2
710,582 - CSW01_18020 0.75 +0.6
710,605 + CSW01_18020 0.77 +1.3
710,613 - CSW01_18020 0.77 +5.0
710,682 + CSW01_18020 0.83 -2.7
710,843 + +0.8
710,892 + +2.6
710,958 - +0.6
711,016 - CSW01_18025 0.13 -2.3
711,018 + CSW01_18025 0.14 -1.0
711,019 + CSW01_18025 0.14 -1.4
711,026 - CSW01_18025 0.15 +0.4
711,041 + CSW01_18025 0.18 -1.2
711,041 + CSW01_18025 0.18 -0.3
711,069 + CSW01_18025 0.23 -0.7
711,074 + CSW01_18025 0.23 +0.8
711,079 + CSW01_18025 0.24 +0.7
711,082 - CSW01_18025 0.25 +1.3
711,100 + CSW01_18025 0.28 -2.7
711,124 + CSW01_18025 0.32 +0.4
711,199 + CSW01_18025 0.45 -0.8
711,207 - CSW01_18025 0.46 +0.3
711,207 - CSW01_18025 0.46 -0.0
711,260 - CSW01_18025 0.55 +0.6
711,285 + CSW01_18025 0.60 +0.4
711,372 + CSW01_18025 0.75 -1.4
711,385 + CSW01_18025 0.77 -0.4
711,587 - CSW01_18030 0.26 +0.3
711,637 - CSW01_18030 0.68 -0.4
711,639 + CSW01_18030 0.69 -1.8
711,647 - CSW01_18030 0.76 -0.4
711,683 - +1.0
711,683 - -1.9
711,710 + -0.0
711,737 + -2.2
711,761 - +0.5
711,767 + +0.1
711,817 - -1.2
712,284 - CSW01_18035 0.20 -0.3
712,471 - CSW01_18035 0.36 -1.8
712,500 + CSW01_18035 0.38 -2.5

Or see this region's nucleotide sequence