Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17900

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17885 and CSW01_17890 overlap by 1 nucleotidesCSW01_17890 and CSW01_17895 are separated by 263 nucleotidesCSW01_17895 and CSW01_17900 are separated by 80 nucleotidesCSW01_17900 and CSW01_17905 are separated by 129 nucleotides CSW01_17885: CSW01_17885 - hypothetical protein, at 685,213 to 685,533 _17885 CSW01_17890: CSW01_17890 - hypothetical protein, at 685,533 to 685,682 _17890 CSW01_17895: CSW01_17895 - hypothetical protein, at 685,946 to 686,197 _17895 CSW01_17900: CSW01_17900 - glycerol kinase, at 686,278 to 687,795 _17900 CSW01_17905: CSW01_17905 - aquaporin family protein, at 687,925 to 688,779 _17905 Position (kb) 686 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 685.313 kb on - strand, within CSW01_17885at 685.313 kb on - strand, within CSW01_17885at 685.326 kb on + strand, within CSW01_17885at 685.567 kb on - strand, within CSW01_17890at 685.755 kb on - strandat 685.826 kb on + strandat 685.826 kb on + strandat 685.863 kb on + strandat 685.909 kb on + strandat 685.909 kb on + strandat 685.918 kb on + strandat 685.927 kb on - strandat 686.089 kb on + strand, within CSW01_17895at 686.115 kb on + strand, within CSW01_17895at 686.115 kb on + strand, within CSW01_17895at 686.123 kb on - strand, within CSW01_17895at 686.301 kb on - strandat 686.301 kb on - strandat 686.303 kb on + strandat 686.308 kb on + strandat 686.313 kb on + strandat 686.316 kb on - strandat 686.316 kb on - strandat 686.332 kb on + strandat 686.332 kb on + strandat 686.340 kb on - strandat 686.379 kb on + strandat 686.379 kb on + strandat 686.379 kb on + strandat 686.387 kb on - strandat 686.418 kb on + strandat 686.470 kb on - strand, within CSW01_17900at 686.490 kb on + strand, within CSW01_17900at 686.525 kb on + strand, within CSW01_17900at 686.525 kb on + strand, within CSW01_17900at 686.533 kb on - strand, within CSW01_17900at 686.587 kb on - strand, within CSW01_17900at 686.723 kb on + strand, within CSW01_17900at 686.723 kb on + strand, within CSW01_17900at 686.737 kb on + strand, within CSW01_17900at 686.737 kb on + strand, within CSW01_17900at 686.760 kb on - strand, within CSW01_17900at 686.867 kb on + strand, within CSW01_17900at 686.867 kb on + strand, within CSW01_17900at 686.904 kb on - strand, within CSW01_17900at 686.915 kb on + strand, within CSW01_17900at 686.977 kb on - strand, within CSW01_17900at 687.048 kb on - strand, within CSW01_17900at 687.126 kb on - strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.230 kb on - strand, within CSW01_17900at 687.242 kb on + strand, within CSW01_17900at 687.244 kb on - strand, within CSW01_17900at 687.275 kb on - strand, within CSW01_17900at 687.331 kb on - strand, within CSW01_17900at 687.363 kb on - strand, within CSW01_17900at 687.380 kb on + strand, within CSW01_17900at 687.573 kb on + strand, within CSW01_17900at 687.615 kb on + strand, within CSW01_17900at 687.622 kb on + strand, within CSW01_17900at 687.623 kb on - strand, within CSW01_17900at 687.660 kb on - strandat 687.682 kb on - strandat 687.727 kb on + strandat 687.727 kb on + strandat 687.735 kb on - strandat 687.843 kb on + strandat 687.880 kb on - strandat 687.892 kb on - strandat 687.936 kb on + strandat 687.948 kb on + strandat 687.954 kb on - strandat 687.956 kb on - strandat 687.956 kb on - strandat 687.984 kb on - strandat 688.140 kb on + strand, within CSW01_17905at 688.165 kb on - strand, within CSW01_17905at 688.171 kb on - strand, within CSW01_17905at 688.173 kb on - strand, within CSW01_17905at 688.237 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.302 kb on - strand, within CSW01_17905at 688.372 kb on - strand, within CSW01_17905at 688.457 kb on + strand, within CSW01_17905at 688.465 kb on - strand, within CSW01_17905at 688.513 kb on - strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.576 kb on - strand, within CSW01_17905at 688.719 kb on - strandat 688.721 kb on + strandat 688.744 kb on - strandat 688.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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685,313 - CSW01_17885 0.31 -0.6
685,313 - CSW01_17885 0.31 -2.1
685,326 + CSW01_17885 0.35 -2.2
685,567 - CSW01_17890 0.23 +0.1
685,755 - -2.6
685,826 + -0.7
685,826 + -4.1
685,863 + -0.5
685,909 + -0.4
685,909 + +0.3
685,918 + +0.4
685,927 - +0.0
686,089 + CSW01_17895 0.57 +0.1
686,115 + CSW01_17895 0.67 +1.3
686,115 + CSW01_17895 0.67 +1.1
686,123 - CSW01_17895 0.70 +0.5
686,301 - +0.8
686,301 - +1.0
686,303 + -1.6
686,308 + -1.3
686,313 + -0.3
686,316 - +1.3
686,316 - +0.1
686,332 + +0.0
686,332 + +0.9
686,340 - +0.6
686,379 + -1.1
686,379 + -0.5
686,379 + -0.5
686,387 - +1.0
686,418 + -3.7
686,470 - CSW01_17900 0.13 -0.7
686,490 + CSW01_17900 0.14 +0.9
686,525 + CSW01_17900 0.16 +0.2
686,525 + CSW01_17900 0.16 -0.8
686,533 - CSW01_17900 0.17 +0.1
686,587 - CSW01_17900 0.20 -1.1
686,723 + CSW01_17900 0.29 -2.5
686,723 + CSW01_17900 0.29 -0.7
686,737 + CSW01_17900 0.30 -1.1
686,737 + CSW01_17900 0.30 +1.2
686,760 - CSW01_17900 0.32 -0.3
686,867 + CSW01_17900 0.39 -0.2
686,867 + CSW01_17900 0.39 +0.9
686,904 - CSW01_17900 0.41 +0.6
686,915 + CSW01_17900 0.42 +1.6
686,977 - CSW01_17900 0.46 +2.2
687,048 - CSW01_17900 0.51 -1.0
687,126 - CSW01_17900 0.56 +1.3
687,222 + CSW01_17900 0.62 +0.9
687,222 + CSW01_17900 0.62 +0.5
687,222 + CSW01_17900 0.62 -1.5
687,230 - CSW01_17900 0.63 -1.9
687,242 + CSW01_17900 0.64 -2.3
687,244 - CSW01_17900 0.64 +1.5
687,275 - CSW01_17900 0.66 -2.0
687,331 - CSW01_17900 0.69 -1.2
687,363 - CSW01_17900 0.71 -2.3
687,380 + CSW01_17900 0.73 -0.9
687,573 + CSW01_17900 0.85 -0.1
687,615 + CSW01_17900 0.88 -1.0
687,622 + CSW01_17900 0.89 +0.7
687,623 - CSW01_17900 0.89 -2.8
687,660 - -1.4
687,682 - +0.4
687,727 + -0.2
687,727 + +0.2
687,735 - +0.9
687,843 + +0.9
687,880 - -0.9
687,892 - -1.4
687,936 + -0.5
687,948 + -1.6
687,954 - -1.7
687,956 - +2.3
687,956 - -0.2
687,984 - +1.4
688,140 + CSW01_17905 0.25 +1.2
688,165 - CSW01_17905 0.28 -0.9
688,171 - CSW01_17905 0.29 -2.4
688,173 - CSW01_17905 0.29 -1.0
688,237 + CSW01_17905 0.36 -1.5
688,294 + CSW01_17905 0.43 -1.5
688,294 + CSW01_17905 0.43 -1.6
688,294 + CSW01_17905 0.43 -0.2
688,302 - CSW01_17905 0.44 -0.5
688,372 - CSW01_17905 0.52 -0.9
688,457 + CSW01_17905 0.62 -2.3
688,465 - CSW01_17905 0.63 -1.4
688,513 - CSW01_17905 0.69 +1.5
688,568 + CSW01_17905 0.75 -0.1
688,568 + CSW01_17905 0.75 -0.8
688,576 - CSW01_17905 0.76 +0.4
688,719 - +0.4
688,721 + -2.8
688,744 - -1.1
688,763 - -1.6

Or see this region's nucleotide sequence