Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17865 and CSW01_17870 are separated by 101 nucleotides CSW01_17870 and CSW01_17875 are separated by 16 nucleotides CSW01_17875 and CSW01_17880 are separated by 41 nucleotides
CSW01_17865: CSW01_17865 - conjugal transfer protein TraF, at 682,552 to 683,712
_17865
CSW01_17870: CSW01_17870 - GIY-YIG nuclease family protein, at 683,814 to 684,119
_17870
CSW01_17875: CSW01_17875 - DUF480 domain-containing protein, at 684,136 to 684,786
_17875
CSW01_17880: CSW01_17880 - hypothetical protein, at 684,828 to 685,025
_17880
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 682.854 kb on - strand, within CSW01_17865 at 682.996 kb on - strand, within CSW01_17865 at 683.058 kb on - strand, within CSW01_17865 at 683.090 kb on - strand, within CSW01_17865 at 683.162 kb on - strand, within CSW01_17865 at 683.165 kb on + strand, within CSW01_17865 at 683.213 kb on - strand, within CSW01_17865 at 683.241 kb on - strand, within CSW01_17865 at 683.261 kb on - strand, within CSW01_17865 at 683.299 kb on - strand, within CSW01_17865 at 683.310 kb on + strand, within CSW01_17865 at 683.343 kb on - strand, within CSW01_17865 at 683.343 kb on - strand, within CSW01_17865 at 683.390 kb on - strand, within CSW01_17865 at 683.428 kb on - strand, within CSW01_17865 at 683.451 kb on + strand, within CSW01_17865 at 683.493 kb on + strand, within CSW01_17865 at 683.493 kb on + strand, within CSW01_17865 at 683.493 kb on + strand, within CSW01_17865 at 683.493 kb on + strand, within CSW01_17865 at 683.493 kb on + strand, within CSW01_17865 at 683.501 kb on - strand, within CSW01_17865 at 683.501 kb on - strand, within CSW01_17865 at 683.501 kb on - strand, within CSW01_17865 at 683.501 kb on - strand, within CSW01_17865 at 683.501 kb on - strand, within CSW01_17865 at 683.555 kb on + strand, within CSW01_17865 at 683.618 kb on - strand at 683.672 kb on + strand at 683.733 kb on + strand at 683.752 kb on + strand at 683.886 kb on - strand, within CSW01_17870 at 683.947 kb on + strand, within CSW01_17870 at 683.955 kb on - strand, within CSW01_17870 at 684.036 kb on + strand, within CSW01_17870 at 684.043 kb on + strand, within CSW01_17870 at 684.051 kb on - strand, within CSW01_17870 at 684.091 kb on + strand at 684.099 kb on - strand at 684.189 kb on + strand at 684.219 kb on + strand, within CSW01_17875 at 684.271 kb on + strand, within CSW01_17875 at 684.279 kb on - strand, within CSW01_17875 at 684.305 kb on + strand, within CSW01_17875 at 684.311 kb on + strand, within CSW01_17875 at 684.378 kb on - strand, within CSW01_17875 at 684.417 kb on + strand, within CSW01_17875 at 684.418 kb on - strand, within CSW01_17875 at 684.456 kb on - strand, within CSW01_17875 at 684.465 kb on + strand, within CSW01_17875 at 684.473 kb on - strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.616 kb on + strand, within CSW01_17875 at 684.640 kb on + strand, within CSW01_17875 at 684.757 kb on + strand at 684.801 kb on - strand at 684.834 kb on - strand at 684.925 kb on - strand, within CSW01_17880 at 684.970 kb on + strand, within CSW01_17880 at 685.031 kb on + strand at 685.033 kb on + strand at 685.039 kb on + strand at 685.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 682,854 - CSW01_17865 0.26 -1.3 682,996 - CSW01_17865 0.38 -0.2 683,058 - CSW01_17865 0.44 -0.1 683,090 - CSW01_17865 0.46 +2.9 683,162 - CSW01_17865 0.53 -0.7 683,165 + CSW01_17865 0.53 -0.3 683,213 - CSW01_17865 0.57 +0.4 683,241 - CSW01_17865 0.59 +1.4 683,261 - CSW01_17865 0.61 +1.8 683,299 - CSW01_17865 0.64 -3.4 683,310 + CSW01_17865 0.65 -0.8 683,343 - CSW01_17865 0.68 -2.2 683,343 - CSW01_17865 0.68 -1.9 683,390 - CSW01_17865 0.72 +1.9 683,428 - CSW01_17865 0.75 -1.4 683,451 + CSW01_17865 0.77 -1.9 683,493 + CSW01_17865 0.81 +0.9 683,493 + CSW01_17865 0.81 +0.0 683,493 + CSW01_17865 0.81 -0.5 683,493 + CSW01_17865 0.81 +0.3 683,493 + CSW01_17865 0.81 +0.2 683,501 - CSW01_17865 0.82 -0.8 683,501 - CSW01_17865 0.82 -2.5 683,501 - CSW01_17865 0.82 -1.1 683,501 - CSW01_17865 0.82 -0.1 683,501 - CSW01_17865 0.82 +0.4 683,555 + CSW01_17865 0.86 +0.9 683,618 - -0.1 683,672 + -1.2 683,733 + +0.1 683,752 + +0.2 683,886 - CSW01_17870 0.24 +0.8 683,947 + CSW01_17870 0.43 +1.2 683,955 - CSW01_17870 0.46 +0.5 684,036 + CSW01_17870 0.73 -1.0 684,043 + CSW01_17870 0.75 +0.3 684,051 - CSW01_17870 0.77 -2.5 684,091 + -0.4 684,099 - -0.5 684,189 + -2.4 684,219 + CSW01_17875 0.13 +0.4 684,271 + CSW01_17875 0.21 -2.2 684,279 - CSW01_17875 0.22 +1.2 684,305 + CSW01_17875 0.26 -1.4 684,311 + CSW01_17875 0.27 +0.3 684,378 - CSW01_17875 0.37 -0.3 684,417 + CSW01_17875 0.43 -0.4 684,418 - CSW01_17875 0.43 -0.2 684,456 - CSW01_17875 0.49 -0.7 684,465 + CSW01_17875 0.51 +0.8 684,473 - CSW01_17875 0.52 -2.8 684,597 + CSW01_17875 0.71 +1.0 684,597 + CSW01_17875 0.71 +0.3 684,616 + CSW01_17875 0.74 +0.1 684,640 + CSW01_17875 0.77 -0.4 684,757 + -0.1 684,801 - -0.7 684,834 - -0.0 684,925 - CSW01_17880 0.49 +0.2 684,970 + CSW01_17880 0.72 -0.7 685,031 + +1.5 685,033 + +0.7 685,039 + +1.7 685,041 - -0.4
Or see this region's nucleotide sequence