Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17580

Experiment: ICP3_phage_4.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17570 and CSW01_17575 are separated by 5 nucleotidesCSW01_17575 and CSW01_17580 overlap by 4 nucleotidesCSW01_17580 and CSW01_17585 are separated by 66 nucleotidesCSW01_17585 and CSW01_17590 are separated by 17 nucleotides CSW01_17570: CSW01_17570 - ferredoxin-type protein NapF, at 609,887 to 610,393 _17570 CSW01_17575: CSW01_17575 - mycothiol reductase, at 610,399 to 610,740 _17575 CSW01_17580: CSW01_17580 - periplasmic nitrate reductase subunit alpha, at 610,737 to 613,226 _17580 CSW01_17585: CSW01_17585 - periplasmic nitrate reductase electron transfer subunit, at 613,293 to 613,748 _17585 CSW01_17590: CSW01_17590 - cytochrome C, at 613,766 to 614,341 _17590 Position (kb) 610 611 612 613 614Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 609.738 kb on - strandat 609.740 kb on + strandat 609.740 kb on + strandat 609.748 kb on - strandat 609.748 kb on - strandat 609.755 kb on - strandat 609.884 kb on + strandat 609.967 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.031 kb on - strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.126 kb on + strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.139 kb on - strand, within CSW01_17570at 610.159 kb on - strand, within CSW01_17570at 610.163 kb on + strand, within CSW01_17570at 610.193 kb on - strand, within CSW01_17570at 610.198 kb on - strand, within CSW01_17570at 610.287 kb on + strand, within CSW01_17570at 610.300 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.384 kb on - strandat 610.384 kb on - strandat 610.499 kb on + strand, within CSW01_17575at 610.594 kb on + strand, within CSW01_17575at 610.596 kb on - strand, within CSW01_17575at 610.641 kb on + strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575at 610.731 kb on - strandat 610.895 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.913 kb on - strandat 610.954 kb on - strandat 610.956 kb on - strandat 610.970 kb on - strandat 610.984 kb on + strandat 611.157 kb on + strand, within CSW01_17580at 611.157 kb on + strand, within CSW01_17580at 611.182 kb on + strand, within CSW01_17580at 611.182 kb on + strand, within CSW01_17580at 611.190 kb on - strand, within CSW01_17580at 611.190 kb on - strand, within CSW01_17580at 611.254 kb on + strand, within CSW01_17580at 611.254 kb on + strand, within CSW01_17580at 611.298 kb on + strand, within CSW01_17580at 611.300 kb on - strand, within CSW01_17580at 611.317 kb on + strand, within CSW01_17580at 611.325 kb on - strand, within CSW01_17580at 611.357 kb on + strand, within CSW01_17580at 611.424 kb on + strand, within CSW01_17580at 611.813 kb on + strand, within CSW01_17580at 611.813 kb on + strand, within CSW01_17580at 611.813 kb on + strand, within CSW01_17580at 611.821 kb on - strand, within CSW01_17580at 611.821 kb on - strand, within CSW01_17580at 611.847 kb on + strand, within CSW01_17580at 611.891 kb on - strand, within CSW01_17580at 611.972 kb on + strand, within CSW01_17580at 611.983 kb on + strand, within CSW01_17580at 612.000 kb on - strand, within CSW01_17580at 612.015 kb on - strand, within CSW01_17580at 612.015 kb on - strand, within CSW01_17580at 612.031 kb on + strand, within CSW01_17580at 612.041 kb on + strand, within CSW01_17580at 612.046 kb on + strand, within CSW01_17580at 612.046 kb on + strand, within CSW01_17580at 612.046 kb on + strand, within CSW01_17580at 612.049 kb on - strand, within CSW01_17580at 612.056 kb on - strand, within CSW01_17580at 612.056 kb on - strand, within CSW01_17580at 612.093 kb on + strand, within CSW01_17580at 612.144 kb on + strand, within CSW01_17580at 612.179 kb on + strand, within CSW01_17580at 612.236 kb on + strand, within CSW01_17580at 612.277 kb on - strand, within CSW01_17580at 612.355 kb on - strand, within CSW01_17580at 612.518 kb on - strand, within CSW01_17580at 612.535 kb on - strand, within CSW01_17580at 612.543 kb on + strand, within CSW01_17580at 612.568 kb on - strand, within CSW01_17580at 612.632 kb on - strand, within CSW01_17580at 612.689 kb on - strand, within CSW01_17580at 612.754 kb on + strand, within CSW01_17580at 612.762 kb on - strand, within CSW01_17580at 612.762 kb on - strand, within CSW01_17580at 612.867 kb on + strand, within CSW01_17580at 612.881 kb on + strand, within CSW01_17580at 612.881 kb on + strand, within CSW01_17580at 612.882 kb on - strand, within CSW01_17580at 612.889 kb on - strand, within CSW01_17580at 612.889 kb on - strand, within CSW01_17580at 612.894 kb on - strand, within CSW01_17580at 612.908 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.947 kb on + strand, within CSW01_17580at 612.955 kb on - strand, within CSW01_17580at 612.955 kb on - strand, within CSW01_17580at 612.955 kb on - strand, within CSW01_17580at 612.955 kb on - strand, within CSW01_17580at 612.955 kb on - strand, within CSW01_17580at 612.973 kb on + strand, within CSW01_17580at 612.973 kb on + strand, within CSW01_17580at 612.981 kb on - strandat 613.033 kb on + strandat 613.041 kb on - strandat 613.061 kb on - strandat 613.098 kb on + strandat 613.176 kb on + strandat 613.226 kb on + strandat 613.248 kb on + strandat 613.391 kb on - strand, within CSW01_17585at 613.611 kb on - strand, within CSW01_17585at 613.944 kb on + strand, within CSW01_17590at 613.974 kb on + strand, within CSW01_17590at 614.045 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.216 kb on - strand, within CSW01_17590at 614.223 kb on + strand, within CSW01_17590at 614.226 kb on - strand, within CSW01_17590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
remove
609,738 - +0.5
609,740 + -0.5
609,740 + -2.5
609,748 - +0.5
609,748 - +0.3
609,755 - -1.5
609,884 + +0.5
609,967 + CSW01_17570 0.16 +1.3
610,021 + CSW01_17570 0.26 -2.1
610,021 + CSW01_17570 0.26 -2.6
610,031 - CSW01_17570 0.28 -0.2
610,121 + CSW01_17570 0.46 +0.7
610,121 + CSW01_17570 0.46 -0.2
610,126 + CSW01_17570 0.47 +0.4
610,129 - CSW01_17570 0.48 +0.8
610,129 - CSW01_17570 0.48 +1.6
610,139 - CSW01_17570 0.50 +1.0
610,159 - CSW01_17570 0.54 -0.3
610,163 + CSW01_17570 0.54 -2.4
610,193 - CSW01_17570 0.60 +0.4
610,198 - CSW01_17570 0.61 -0.4
610,287 + CSW01_17570 0.79 +0.2
610,300 + CSW01_17570 0.81 -0.9
610,305 + CSW01_17570 0.82 -2.1
610,305 + CSW01_17570 0.82 +1.4
610,308 - CSW01_17570 0.83 -1.2
610,308 - CSW01_17570 0.83 +0.6
610,384 - -2.2
610,384 - -1.7
610,499 + CSW01_17575 0.29 -0.7
610,594 + CSW01_17575 0.57 +0.6
610,596 - CSW01_17575 0.58 +0.4
610,641 + CSW01_17575 0.71 -2.6
610,701 - CSW01_17575 0.88 -0.3
610,701 - CSW01_17575 0.88 -2.5
610,731 - -2.1
610,895 + +2.1
610,900 + -0.8
610,900 + +0.8
610,900 + -1.5
610,900 + +1.3
610,908 - -0.3
610,908 - +1.6
610,908 - -1.6
610,908 - +1.3
610,908 - -1.6
610,908 - -0.1
610,913 - +0.2
610,954 - +1.2
610,956 - -1.1
610,970 - -0.5
610,984 + +1.4
611,157 + CSW01_17580 0.17 +2.9
611,157 + CSW01_17580 0.17 +0.2
611,182 + CSW01_17580 0.18 +0.6
611,182 + CSW01_17580 0.18 +0.4
611,190 - CSW01_17580 0.18 -2.0
611,190 - CSW01_17580 0.18 +0.5
611,254 + CSW01_17580 0.21 +0.8
611,254 + CSW01_17580 0.21 -1.6
611,298 + CSW01_17580 0.23 +0.8
611,300 - CSW01_17580 0.23 -0.8
611,317 + CSW01_17580 0.23 +1.1
611,325 - CSW01_17580 0.24 -1.6
611,357 + CSW01_17580 0.25 +0.8
611,424 + CSW01_17580 0.28 -0.6
611,813 + CSW01_17580 0.43 +1.7
611,813 + CSW01_17580 0.43 +0.3
611,813 + CSW01_17580 0.43 +0.3
611,821 - CSW01_17580 0.44 -2.3
611,821 - CSW01_17580 0.44 -2.1
611,847 + CSW01_17580 0.45 -0.7
611,891 - CSW01_17580 0.46 -0.6
611,972 + CSW01_17580 0.50 -1.0
611,983 + CSW01_17580 0.50 +0.0
612,000 - CSW01_17580 0.51 -0.6
612,015 - CSW01_17580 0.51 -0.9
612,015 - CSW01_17580 0.51 +1.3
612,031 + CSW01_17580 0.52 -1.1
612,041 + CSW01_17580 0.52 -0.7
612,046 + CSW01_17580 0.53 +0.6
612,046 + CSW01_17580 0.53 -1.6
612,046 + CSW01_17580 0.53 +1.7
612,049 - CSW01_17580 0.53 -3.1
612,056 - CSW01_17580 0.53 -0.2
612,056 - CSW01_17580 0.53 -0.9
612,093 + CSW01_17580 0.54 +0.6
612,144 + CSW01_17580 0.57 +0.7
612,179 + CSW01_17580 0.58 +0.2
612,236 + CSW01_17580 0.60 +2.1
612,277 - CSW01_17580 0.62 -2.0
612,355 - CSW01_17580 0.65 -1.9
612,518 - CSW01_17580 0.72 -2.3
612,535 - CSW01_17580 0.72 -0.8
612,543 + CSW01_17580 0.73 +1.2
612,568 - CSW01_17580 0.74 -2.1
612,632 - CSW01_17580 0.76 +0.1
612,689 - CSW01_17580 0.78 -0.1
612,754 + CSW01_17580 0.81 +1.4
612,762 - CSW01_17580 0.81 -2.4
612,762 - CSW01_17580 0.81 +0.2
612,867 + CSW01_17580 0.86 +1.1
612,881 + CSW01_17580 0.86 -2.0
612,881 + CSW01_17580 0.86 -1.1
612,882 - CSW01_17580 0.86 +0.9
612,889 - CSW01_17580 0.86 -1.4
612,889 - CSW01_17580 0.86 +0.8
612,894 - CSW01_17580 0.87 -1.2
612,908 + CSW01_17580 0.87 -0.0
612,947 + CSW01_17580 0.89 -0.4
612,947 + CSW01_17580 0.89 -0.4
612,947 + CSW01_17580 0.89 +0.5
612,947 + CSW01_17580 0.89 +0.1
612,947 + CSW01_17580 0.89 +1.5
612,947 + CSW01_17580 0.89 -2.8
612,955 - CSW01_17580 0.89 -1.0
612,955 - CSW01_17580 0.89 -1.7
612,955 - CSW01_17580 0.89 -0.4
612,955 - CSW01_17580 0.89 +1.4
612,955 - CSW01_17580 0.89 -1.0
612,973 + CSW01_17580 0.90 +0.7
612,973 + CSW01_17580 0.90 -3.9
612,981 - -0.1
613,033 + -1.4
613,041 - +0.2
613,061 - -2.4
613,098 + +1.6
613,176 + -0.5
613,226 + +0.7
613,248 + -2.7
613,391 - CSW01_17585 0.21 -1.1
613,611 - CSW01_17585 0.70 +1.3
613,944 + CSW01_17590 0.31 +0.0
613,974 + CSW01_17590 0.36 +0.3
614,045 + CSW01_17590 0.48 +0.8
614,208 + CSW01_17590 0.77 +1.5
614,208 + CSW01_17590 0.77 -0.7
614,208 + CSW01_17590 0.77 +0.4
614,216 - CSW01_17590 0.78 -0.2
614,223 + CSW01_17590 0.79 +0.3
614,226 - CSW01_17590 0.80 -1.1

Or see this region's nucleotide sequence