Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17520 and CSW01_17525 overlap by 60 nucleotides CSW01_17525 and CSW01_17530 are separated by 264 nucleotides
CSW01_17520: CSW01_17520 - methyl-accepting chemotaxis protein, at 596,737 to 598,500
_17520
CSW01_17525: CSW01_17525 - hypothetical protein, at 598,441 to 598,629
_17525
CSW01_17530: CSW01_17530 - anaerobic C4-dicarboxylate transporter DcuC, at 598,894 to 600,273
_17530
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 597.656 kb on + strand, within CSW01_17520 at 597.666 kb on + strand, within CSW01_17520 at 597.671 kb on + strand, within CSW01_17520 at 597.703 kb on - strand, within CSW01_17520 at 597.751 kb on + strand, within CSW01_17520 at 597.759 kb on - strand, within CSW01_17520 at 597.773 kb on + strand, within CSW01_17520 at 597.781 kb on - strand, within CSW01_17520 at 597.819 kb on + strand, within CSW01_17520 at 597.839 kb on + strand, within CSW01_17520 at 597.907 kb on + strand, within CSW01_17520 at 597.915 kb on - strand, within CSW01_17520 at 597.917 kb on + strand, within CSW01_17520 at 597.917 kb on + strand, within CSW01_17520 at 597.923 kb on - strand, within CSW01_17520 at 597.925 kb on - strand, within CSW01_17520 at 597.925 kb on - strand, within CSW01_17520 at 597.997 kb on + strand, within CSW01_17520 at 597.997 kb on + strand, within CSW01_17520 at 598.039 kb on - strand, within CSW01_17520 at 598.111 kb on + strand, within CSW01_17520 at 598.117 kb on + strand, within CSW01_17520 at 598.119 kb on - strand, within CSW01_17520 at 598.182 kb on - strand, within CSW01_17520 at 598.220 kb on - strand, within CSW01_17520 at 598.299 kb on - strand, within CSW01_17520 at 598.330 kb on + strand at 598.330 kb on + strand at 598.330 kb on + strand at 598.338 kb on - strand at 598.340 kb on + strand at 598.349 kb on + strand at 598.377 kb on + strand at 598.418 kb on + strand at 598.426 kb on - strand at 598.426 kb on - strand at 598.428 kb on + strand at 598.428 kb on + strand at 598.428 kb on + strand at 598.428 kb on + strand at 598.444 kb on + strand at 598.446 kb on - strand at 598.450 kb on + strand at 598.507 kb on - strand, within CSW01_17525 at 598.645 kb on + strand at 598.863 kb on + strand at 598.930 kb on + strand at 598.930 kb on + strand at 598.966 kb on + strand at 598.968 kb on + strand at 598.968 kb on + strand at 598.968 kb on + strand at 598.974 kb on - strand at 598.992 kb on - strand at 599.002 kb on - strand at 599.073 kb on + strand, within CSW01_17530 at 599.087 kb on + strand, within CSW01_17530 at 599.098 kb on + strand, within CSW01_17530 at 599.242 kb on + strand, within CSW01_17530 at 599.250 kb on - strand, within CSW01_17530 at 599.306 kb on + strand, within CSW01_17530 at 599.306 kb on - strand, within CSW01_17530 at 599.389 kb on + strand, within CSW01_17530 at 599.511 kb on - strand, within CSW01_17530
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 597,656 + CSW01_17520 0.52 -0.4 597,666 + CSW01_17520 0.53 +1.2 597,671 + CSW01_17520 0.53 +0.6 597,703 - CSW01_17520 0.55 -0.5 597,751 + CSW01_17520 0.57 +1.5 597,759 - CSW01_17520 0.58 +0.7 597,773 + CSW01_17520 0.59 -1.4 597,781 - CSW01_17520 0.59 +0.6 597,819 + CSW01_17520 0.61 +0.4 597,839 + CSW01_17520 0.62 -0.0 597,907 + CSW01_17520 0.66 -1.2 597,915 - CSW01_17520 0.67 +0.7 597,917 + CSW01_17520 0.67 +0.1 597,917 + CSW01_17520 0.67 +1.1 597,923 - CSW01_17520 0.67 +1.4 597,925 - CSW01_17520 0.67 -0.4 597,925 - CSW01_17520 0.67 +0.4 597,997 + CSW01_17520 0.71 +0.9 597,997 + CSW01_17520 0.71 -2.1 598,039 - CSW01_17520 0.74 -2.7 598,111 + CSW01_17520 0.78 +0.8 598,117 + CSW01_17520 0.78 +0.4 598,119 - CSW01_17520 0.78 -1.0 598,182 - CSW01_17520 0.82 +1.2 598,220 - CSW01_17520 0.84 +1.2 598,299 - CSW01_17520 0.89 -1.2 598,330 + +0.5 598,330 + -0.2 598,330 + -2.3 598,338 - -0.5 598,340 + -0.6 598,349 + -1.0 598,377 + -1.0 598,418 + +0.8 598,426 - -0.7 598,426 - -0.9 598,428 + +0.6 598,428 + -1.8 598,428 + -2.4 598,428 + -0.1 598,444 + +0.4 598,446 - +0.3 598,450 + +0.3 598,507 - CSW01_17525 0.35 -0.8 598,645 + +1.1 598,863 + -3.1 598,930 + +0.4 598,930 + +0.1 598,966 + -0.9 598,968 + +1.2 598,968 + -0.3 598,968 + +0.5 598,974 - -0.9 598,992 - +1.1 599,002 - +1.0 599,073 + CSW01_17530 0.13 +1.5 599,087 + CSW01_17530 0.14 +2.8 599,098 + CSW01_17530 0.15 +0.6 599,242 + CSW01_17530 0.25 -1.7 599,250 - CSW01_17530 0.26 -1.5 599,306 + CSW01_17530 0.30 +2.1 599,306 - CSW01_17530 0.30 -0.9 599,389 + CSW01_17530 0.36 +0.4 599,511 - CSW01_17530 0.45 +2.5
Or see this region's nucleotide sequence