Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17500 and CSW01_17505 are separated by 185 nucleotides CSW01_17505 and CSW01_17510 are separated by 212 nucleotides CSW01_17510 and CSW01_17515 are separated by 80 nucleotides
CSW01_17500: CSW01_17500 - methyl-accepting chemotaxis protein, at 592,766 to 594,376
_17500
CSW01_17505: CSW01_17505 - hypothetical protein, at 594,562 to 595,185
_17505
CSW01_17510: CSW01_17510 - peptidylprolyl isomerase, at 595,398 to 595,871
_17510
CSW01_17515: CSW01_17515 - beta-phosphoglucomutase family hydrolase, at 595,952 to 596,590
_17515
Position (kb) 594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 593.611 kb on - strand, within CSW01_17500 at 593.707 kb on + strand, within CSW01_17500 at 593.719 kb on + strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.727 kb on - strand, within CSW01_17500 at 593.728 kb on + strand, within CSW01_17500 at 593.736 kb on - strand, within CSW01_17500 at 593.736 kb on - strand, within CSW01_17500 at 593.749 kb on - strand, within CSW01_17500 at 593.749 kb on - strand, within CSW01_17500 at 593.807 kb on + strand, within CSW01_17500 at 593.809 kb on + strand, within CSW01_17500 at 593.868 kb on + strand, within CSW01_17500 at 593.876 kb on - strand, within CSW01_17500 at 593.890 kb on - strand, within CSW01_17500 at 593.984 kb on - strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.000 kb on + strand, within CSW01_17500 at 594.008 kb on - strand, within CSW01_17500 at 594.106 kb on + strand, within CSW01_17500 at 594.113 kb on - strand, within CSW01_17500 at 594.113 kb on - strand, within CSW01_17500 at 594.114 kb on - strand, within CSW01_17500 at 594.248 kb on + strand at 594.322 kb on - strand at 594.407 kb on + strand at 594.415 kb on - strand at 594.456 kb on - strand at 594.591 kb on + strand at 594.694 kb on - strand, within CSW01_17505 at 594.753 kb on + strand, within CSW01_17505 at 594.799 kb on + strand, within CSW01_17505 at 594.898 kb on - strand, within CSW01_17505 at 595.005 kb on - strand, within CSW01_17505 at 595.011 kb on + strand, within CSW01_17505 at 595.014 kb on + strand, within CSW01_17505 at 595.037 kb on + strand, within CSW01_17505 at 595.045 kb on - strand, within CSW01_17505 at 595.052 kb on + strand, within CSW01_17505 at 595.126 kb on - strand at 595.359 kb on - strand at 595.467 kb on + strand, within CSW01_17510 at 595.753 kb on - strand, within CSW01_17510 at 595.812 kb on + strand, within CSW01_17510 at 595.840 kb on + strand at 595.872 kb on + strand at 596.071 kb on + strand, within CSW01_17515 at 596.073 kb on - strand, within CSW01_17515 at 596.126 kb on - strand, within CSW01_17515
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 593,611 - CSW01_17500 0.52 +0.1 593,707 + CSW01_17500 0.58 -1.3 593,719 + CSW01_17500 0.59 +0.7 593,727 - CSW01_17500 0.60 +0.2 593,727 - CSW01_17500 0.60 -0.1 593,727 - CSW01_17500 0.60 +0.2 593,728 + CSW01_17500 0.60 +2.8 593,736 - CSW01_17500 0.60 -1.8 593,736 - CSW01_17500 0.60 -0.1 593,749 - CSW01_17500 0.61 +0.8 593,749 - CSW01_17500 0.61 -0.3 593,807 + CSW01_17500 0.65 -0.7 593,809 + CSW01_17500 0.65 +1.9 593,868 + CSW01_17500 0.68 -0.4 593,876 - CSW01_17500 0.69 +0.6 593,890 - CSW01_17500 0.70 -3.8 593,984 - CSW01_17500 0.76 +1.1 594,000 + CSW01_17500 0.77 +0.0 594,000 + CSW01_17500 0.77 +1.5 594,000 + CSW01_17500 0.77 +0.4 594,008 - CSW01_17500 0.77 -1.6 594,106 + CSW01_17500 0.83 -0.5 594,113 - CSW01_17500 0.84 +0.6 594,113 - CSW01_17500 0.84 +0.7 594,114 - CSW01_17500 0.84 -0.1 594,248 + +0.4 594,322 - +2.4 594,407 + -0.7 594,415 - +2.4 594,456 - +0.3 594,591 + -2.2 594,694 - CSW01_17505 0.21 +0.3 594,753 + CSW01_17505 0.31 -0.3 594,799 + CSW01_17505 0.38 +0.2 594,898 - CSW01_17505 0.54 +0.5 595,005 - CSW01_17505 0.71 -0.1 595,011 + CSW01_17505 0.72 -1.5 595,014 + CSW01_17505 0.72 -2.7 595,037 + CSW01_17505 0.76 -1.2 595,045 - CSW01_17505 0.77 +1.8 595,052 + CSW01_17505 0.79 -0.9 595,126 - -0.9 595,359 - -0.5 595,467 + CSW01_17510 0.15 +0.5 595,753 - CSW01_17510 0.75 +0.2 595,812 + CSW01_17510 0.87 +0.3 595,840 + +0.3 595,872 + +1.5 596,071 + CSW01_17515 0.19 +1.6 596,073 - CSW01_17515 0.19 +1.4 596,126 - CSW01_17515 0.27 -0.7
Or see this region's nucleotide sequence