Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17340 and CSW01_17345 are separated by 437 nucleotides CSW01_17345 and CSW01_17350 are separated by 270 nucleotides
CSW01_17340: CSW01_17340 - 23S rRNA methyltransferase, at 561,023 to 561,535
_17340
CSW01_17345: CSW01_17345 - prepilin peptidase, at 561,973 to 564,147
_17345
CSW01_17350: CSW01_17350 - AbrB family transcriptional regulator, at 564,418 to 565,458
_17350
Position (kb) 561
562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.994 kb on - strand at 561.186 kb on + strand, within CSW01_17340 at 561.266 kb on - strand, within CSW01_17340 at 561.405 kb on + strand, within CSW01_17340 at 561.413 kb on - strand, within CSW01_17340 at 561.413 kb on - strand, within CSW01_17340 at 561.437 kb on - strand, within CSW01_17340 at 561.482 kb on + strand, within CSW01_17340 at 561.531 kb on + strand at 561.539 kb on - strand at 561.666 kb on + strand at 561.674 kb on - strand at 561.674 kb on - strand at 561.674 kb on - strand at 561.835 kb on - strand at 561.888 kb on + strand at 561.903 kb on + strand at 561.903 kb on - strand at 561.946 kb on + strand at 561.946 kb on + strand at 561.954 kb on - strand at 561.970 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.987 kb on + strand at 561.992 kb on + strand at 561.992 kb on + strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.995 kb on - strand at 561.998 kb on + strand at 562.000 kb on - strand at 562.005 kb on - strand at 562.049 kb on - strand at 562.051 kb on - strand at 562.090 kb on - strand at 562.207 kb on + strand, within CSW01_17345 at 562.249 kb on + strand, within CSW01_17345 at 562.262 kb on + strand, within CSW01_17345 at 562.273 kb on + strand, within CSW01_17345 at 562.281 kb on - strand, within CSW01_17345 at 562.295 kb on + strand, within CSW01_17345 at 562.296 kb on + strand, within CSW01_17345 at 562.303 kb on - strand, within CSW01_17345 at 562.335 kb on + strand, within CSW01_17345 at 562.349 kb on + strand, within CSW01_17345 at 562.372 kb on + strand, within CSW01_17345 at 562.372 kb on + strand, within CSW01_17345 at 562.372 kb on + strand, within CSW01_17345 at 562.372 kb on + strand, within CSW01_17345 at 562.372 kb on - strand, within CSW01_17345 at 562.380 kb on - strand, within CSW01_17345 at 562.701 kb on + strand, within CSW01_17345 at 562.718 kb on - strand, within CSW01_17345 at 562.842 kb on + strand, within CSW01_17345 at 563.034 kb on + strand, within CSW01_17345 at 563.034 kb on + strand, within CSW01_17345 at 563.040 kb on + strand, within CSW01_17345 at 563.040 kb on + strand, within CSW01_17345 at 563.040 kb on + strand, within CSW01_17345 at 563.041 kb on - strand, within CSW01_17345 at 563.049 kb on - strand, within CSW01_17345 at 563.065 kb on + strand, within CSW01_17345 at 563.065 kb on + strand, within CSW01_17345 at 563.073 kb on + strand, within CSW01_17345 at 563.073 kb on - strand, within CSW01_17345 at 563.073 kb on - strand, within CSW01_17345 at 563.125 kb on + strand, within CSW01_17345 at 563.125 kb on + strand, within CSW01_17345 at 563.125 kb on + strand, within CSW01_17345 at 563.125 kb on + strand, within CSW01_17345 at 563.133 kb on - strand, within CSW01_17345 at 563.133 kb on - strand, within CSW01_17345 at 563.133 kb on - strand, within CSW01_17345 at 563.133 kb on - strand, within CSW01_17345 at 563.135 kb on + strand, within CSW01_17345 at 563.135 kb on + strand, within CSW01_17345 at 563.143 kb on + strand, within CSW01_17345 at 563.143 kb on + strand, within CSW01_17345 at 563.143 kb on + strand, within CSW01_17345 at 563.144 kb on - strand, within CSW01_17345 at 563.144 kb on - strand, within CSW01_17345 at 563.151 kb on + strand, within CSW01_17345 at 563.151 kb on - strand, within CSW01_17345 at 563.151 kb on - strand, within CSW01_17345 at 563.159 kb on - strand, within CSW01_17345 at 563.172 kb on - strand, within CSW01_17345 at 563.224 kb on + strand, within CSW01_17345 at 563.225 kb on - strand, within CSW01_17345 at 563.232 kb on + strand, within CSW01_17345 at 563.244 kb on + strand, within CSW01_17345 at 563.253 kb on + strand, within CSW01_17345 at 563.277 kb on + strand, within CSW01_17345 at 563.277 kb on + strand, within CSW01_17345 at 563.277 kb on + strand, within CSW01_17345 at 563.287 kb on + strand, within CSW01_17345 at 563.293 kb on - strand, within CSW01_17345 at 563.297 kb on + strand, within CSW01_17345 at 563.297 kb on + strand, within CSW01_17345 at 563.297 kb on + strand, within CSW01_17345 at 563.297 kb on + strand, within CSW01_17345 at 563.297 kb on + strand, within CSW01_17345 at 563.432 kb on + strand, within CSW01_17345 at 563.486 kb on - strand, within CSW01_17345 at 563.522 kb on - strand, within CSW01_17345 at 563.527 kb on + strand, within CSW01_17345 at 563.527 kb on + strand, within CSW01_17345 at 563.535 kb on - strand, within CSW01_17345 at 563.547 kb on + strand, within CSW01_17345 at 563.547 kb on + strand, within CSW01_17345 at 563.555 kb on - strand, within CSW01_17345 at 563.557 kb on + strand, within CSW01_17345 at 563.628 kb on + strand, within CSW01_17345 at 563.634 kb on - strand, within CSW01_17345 at 563.635 kb on - strand, within CSW01_17345 at 563.658 kb on - strand, within CSW01_17345 at 563.731 kb on + strand, within CSW01_17345 at 563.731 kb on + strand, within CSW01_17345 at 563.739 kb on - strand, within CSW01_17345 at 563.739 kb on - strand, within CSW01_17345 at 563.794 kb on + strand, within CSW01_17345 at 563.794 kb on + strand, within CSW01_17345 at 563.804 kb on + strand, within CSW01_17345 at 563.804 kb on + strand, within CSW01_17345 at 563.804 kb on + strand, within CSW01_17345 at 563.804 kb on - strand, within CSW01_17345 at 563.810 kb on + strand, within CSW01_17345 at 563.812 kb on - strand, within CSW01_17345 at 563.812 kb on - strand, within CSW01_17345 at 563.858 kb on - strand, within CSW01_17345 at 563.868 kb on - strand, within CSW01_17345 at 563.877 kb on + strand, within CSW01_17345 at 563.953 kb on + strand at 563.961 kb on - strand at 563.963 kb on - strand at 564.121 kb on + strand at 564.123 kb on + strand at 564.123 kb on + strand at 564.131 kb on - strand at 564.131 kb on - strand at 564.143 kb on + strand at 564.151 kb on - strand at 564.167 kb on + strand at 564.182 kb on + strand at 564.182 kb on + strand at 564.182 kb on + strand at 564.182 kb on + strand at 564.182 kb on + strand at 564.190 kb on - strand at 564.228 kb on + strand at 564.246 kb on - strand at 564.251 kb on + strand at 564.275 kb on - strand at 564.282 kb on - strand at 564.318 kb on - strand at 564.340 kb on + strand at 564.347 kb on - strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.367 kb on + strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.375 kb on - strand at 564.388 kb on - strand at 564.421 kb on - strand at 564.467 kb on + strand at 564.511 kb on + strand at 564.519 kb on - strand at 564.552 kb on + strand, within CSW01_17350 at 564.562 kb on + strand, within CSW01_17350 at 564.692 kb on + strand, within CSW01_17350 at 564.692 kb on + strand, within CSW01_17350 at 564.700 kb on - strand, within CSW01_17350 at 564.702 kb on + strand, within CSW01_17350 at 564.710 kb on - strand, within CSW01_17350 at 564.717 kb on + strand, within CSW01_17350 at 564.838 kb on + strand, within CSW01_17350 at 564.872 kb on + strand, within CSW01_17350 at 564.880 kb on - strand, within CSW01_17350 at 564.882 kb on + strand, within CSW01_17350 at 565.022 kb on + strand, within CSW01_17350 at 565.029 kb on - strand, within CSW01_17350 at 565.100 kb on - strand, within CSW01_17350 at 565.127 kb on - strand, within CSW01_17350
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 560,994 - +1.2 561,186 + CSW01_17340 0.32 -2.7 561,266 - CSW01_17340 0.47 +1.1 561,405 + CSW01_17340 0.74 +0.5 561,413 - CSW01_17340 0.76 -1.5 561,413 - CSW01_17340 0.76 -0.1 561,437 - CSW01_17340 0.81 +3.0 561,482 + CSW01_17340 0.89 +1.1 561,531 + +1.7 561,539 - +0.3 561,666 + -1.0 561,674 - +0.3 561,674 - +0.3 561,674 - -0.3 561,835 - -1.6 561,888 + -2.0 561,903 + +0.2 561,903 - +1.0 561,946 + +0.0 561,946 + -1.8 561,954 - -1.8 561,970 + +0.4 561,987 + +0.2 561,987 + -0.7 561,987 + -0.2 561,987 + -0.0 561,987 + -0.9 561,987 + -0.7 561,987 + +0.3 561,987 + -0.3 561,987 + +0.1 561,987 + +0.5 561,987 + +0.8 561,987 + -0.8 561,987 + -0.3 561,987 + +0.6 561,987 + +1.6 561,987 + +0.2 561,987 + +1.0 561,987 + +1.2 561,992 + +0.5 561,992 + +0.2 561,995 - +0.7 561,995 - +0.2 561,995 - +0.4 561,995 - -0.2 561,995 - -0.6 561,995 - +0.2 561,995 - -0.2 561,995 - +0.9 561,995 - -1.3 561,995 - +0.4 561,995 - +0.2 561,995 - -0.5 561,995 - -0.1 561,995 - -0.4 561,995 - +0.1 561,995 - -0.6 561,995 - -1.7 561,995 - -1.6 561,995 - +0.7 561,995 - -1.0 561,995 - +0.8 561,998 + -0.6 562,000 - -1.0 562,005 - +1.2 562,049 - +0.0 562,051 - -1.9 562,090 - -1.8 562,207 + CSW01_17345 0.11 -2.5 562,249 + CSW01_17345 0.13 +1.2 562,262 + CSW01_17345 0.13 +0.5 562,273 + CSW01_17345 0.14 +1.3 562,281 - CSW01_17345 0.14 +0.6 562,295 + CSW01_17345 0.15 +0.9 562,296 + CSW01_17345 0.15 -1.1 562,303 - CSW01_17345 0.15 -2.4 562,335 + CSW01_17345 0.17 +1.3 562,349 + CSW01_17345 0.17 +0.2 562,372 + CSW01_17345 0.18 +0.6 562,372 + CSW01_17345 0.18 +0.2 562,372 + CSW01_17345 0.18 +1.8 562,372 + CSW01_17345 0.18 -1.2 562,372 - CSW01_17345 0.18 -1.1 562,380 - CSW01_17345 0.19 -0.7 562,701 + CSW01_17345 0.33 -2.6 562,718 - CSW01_17345 0.34 -3.1 562,842 + CSW01_17345 0.40 -0.3 563,034 + CSW01_17345 0.49 -1.1 563,034 + CSW01_17345 0.49 -2.3 563,040 + CSW01_17345 0.49 +0.4 563,040 + CSW01_17345 0.49 +0.7 563,040 + CSW01_17345 0.49 +1.4 563,041 - CSW01_17345 0.49 -1.5 563,049 - CSW01_17345 0.49 +0.4 563,065 + CSW01_17345 0.50 -1.3 563,065 + CSW01_17345 0.50 -0.9 563,073 + CSW01_17345 0.51 +1.2 563,073 - CSW01_17345 0.51 -0.5 563,073 - CSW01_17345 0.51 -0.4 563,125 + CSW01_17345 0.53 -0.1 563,125 + CSW01_17345 0.53 -0.5 563,125 + CSW01_17345 0.53 -2.3 563,125 + CSW01_17345 0.53 -2.1 563,133 - CSW01_17345 0.53 -0.4 563,133 - CSW01_17345 0.53 -0.1 563,133 - CSW01_17345 0.53 -1.8 563,133 - CSW01_17345 0.53 -1.2 563,135 + CSW01_17345 0.53 +0.1 563,135 + CSW01_17345 0.53 -0.4 563,143 + CSW01_17345 0.54 +0.3 563,143 + CSW01_17345 0.54 +0.9 563,143 + CSW01_17345 0.54 +0.7 563,144 - CSW01_17345 0.54 -0.1 563,144 - CSW01_17345 0.54 -1.2 563,151 + CSW01_17345 0.54 -1.3 563,151 - CSW01_17345 0.54 +0.1 563,151 - CSW01_17345 0.54 -0.5 563,159 - CSW01_17345 0.55 -1.8 563,172 - CSW01_17345 0.55 -0.9 563,224 + CSW01_17345 0.58 +0.7 563,225 - CSW01_17345 0.58 -1.3 563,232 + CSW01_17345 0.58 -2.1 563,244 + CSW01_17345 0.58 -0.8 563,253 + CSW01_17345 0.59 -0.3 563,277 + CSW01_17345 0.60 -1.0 563,277 + CSW01_17345 0.60 +0.7 563,277 + CSW01_17345 0.60 -1.2 563,287 + CSW01_17345 0.60 -0.3 563,293 - CSW01_17345 0.61 -2.8 563,297 + CSW01_17345 0.61 -0.1 563,297 + CSW01_17345 0.61 -0.4 563,297 + CSW01_17345 0.61 +0.1 563,297 + CSW01_17345 0.61 +0.3 563,297 + CSW01_17345 0.61 -1.0 563,432 + CSW01_17345 0.67 -1.2 563,486 - CSW01_17345 0.70 -1.3 563,522 - CSW01_17345 0.71 -0.8 563,527 + CSW01_17345 0.71 -0.7 563,527 + CSW01_17345 0.71 -0.2 563,535 - CSW01_17345 0.72 -0.4 563,547 + CSW01_17345 0.72 -2.8 563,547 + CSW01_17345 0.72 +0.9 563,555 - CSW01_17345 0.73 -2.1 563,557 + CSW01_17345 0.73 +0.1 563,628 + CSW01_17345 0.76 -1.0 563,634 - CSW01_17345 0.76 -2.5 563,635 - CSW01_17345 0.76 -1.2 563,658 - CSW01_17345 0.77 +0.9 563,731 + CSW01_17345 0.81 -2.5 563,731 + CSW01_17345 0.81 +0.4 563,739 - CSW01_17345 0.81 -0.1 563,739 - CSW01_17345 0.81 +0.6 563,794 + CSW01_17345 0.84 -0.5 563,794 + CSW01_17345 0.84 -0.1 563,804 + CSW01_17345 0.84 -0.1 563,804 + CSW01_17345 0.84 -1.1 563,804 + CSW01_17345 0.84 +0.8 563,804 - CSW01_17345 0.84 +1.3 563,810 + CSW01_17345 0.84 -0.5 563,812 - CSW01_17345 0.85 -2.1 563,812 - CSW01_17345 0.85 -0.5 563,858 - CSW01_17345 0.87 -1.7 563,868 - CSW01_17345 0.87 +1.4 563,877 + CSW01_17345 0.88 -2.2 563,953 + +1.4 563,961 - -1.9 563,963 - +0.0 564,121 + -0.5 564,123 + -0.2 564,123 + -3.2 564,131 - +2.0 564,131 - +1.0 564,143 + -0.1 564,151 - -0.5 564,167 + +0.7 564,182 + +0.8 564,182 + -2.5 564,182 + -0.5 564,182 + -2.1 564,182 + -2.5 564,190 - -1.0 564,228 + +1.0 564,246 - +0.8 564,251 + +0.1 564,275 - +0.2 564,282 - +0.6 564,318 - -0.7 564,340 + -2.4 564,347 - +1.0 564,367 + -0.2 564,367 + +0.6 564,367 + +1.4 564,367 + -0.5 564,367 + -0.3 564,367 + +0.2 564,367 + +1.0 564,367 + -2.3 564,375 - -0.7 564,375 - -0.5 564,375 - +0.3 564,375 - +1.3 564,388 - +0.3 564,421 - +1.1 564,467 + -1.8 564,511 + -0.2 564,519 - +0.9 564,552 + CSW01_17350 0.13 +1.7 564,562 + CSW01_17350 0.14 +0.1 564,692 + CSW01_17350 0.26 +2.8 564,692 + CSW01_17350 0.26 -1.5 564,700 - CSW01_17350 0.27 -2.9 564,702 + CSW01_17350 0.27 +1.2 564,710 - CSW01_17350 0.28 +0.9 564,717 + CSW01_17350 0.29 -0.3 564,838 + CSW01_17350 0.40 -2.5 564,872 + CSW01_17350 0.44 +0.1 564,880 - CSW01_17350 0.44 -0.2 564,882 + CSW01_17350 0.45 +1.7 565,022 + CSW01_17350 0.58 -0.5 565,029 - CSW01_17350 0.59 -0.7 565,100 - CSW01_17350 0.66 +1.3 565,127 - CSW01_17350 0.68 +0.5
Or see this region's nucleotide sequence