Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17230

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17225 and CSW01_17230 overlap by 68 nucleotidesCSW01_17230 and CSW01_17235 are separated by 155 nucleotides CSW01_17225: CSW01_17225 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 535,340 to 537,118 _17225 CSW01_17230: CSW01_17230 - putative 2-aminoethylphosphonate ABC transporter ATP-binding protein, at 537,051 to 538,262 _17230 CSW01_17235: CSW01_17235 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 538,418 to 539,437 _17235 Position (kb) 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 536.092 kb on - strand, within CSW01_17225at 536.111 kb on + strand, within CSW01_17225at 536.121 kb on + strand, within CSW01_17225at 536.121 kb on + strand, within CSW01_17225at 536.124 kb on - strand, within CSW01_17225at 536.124 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.131 kb on + strand, within CSW01_17225at 536.257 kb on + strand, within CSW01_17225at 536.262 kb on + strand, within CSW01_17225at 536.262 kb on + strand, within CSW01_17225at 536.265 kb on - strand, within CSW01_17225at 536.265 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.392 kb on - strand, within CSW01_17225at 536.497 kb on - strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.508 kb on - strand, within CSW01_17225at 536.530 kb on - strand, within CSW01_17225at 536.621 kb on - strand, within CSW01_17225at 536.665 kb on + strand, within CSW01_17225at 536.691 kb on + strand, within CSW01_17225at 536.787 kb on - strand, within CSW01_17225at 536.895 kb on + strand, within CSW01_17225at 537.030 kb on + strandat 537.064 kb on + strandat 537.072 kb on - strandat 537.120 kb on + strandat 537.133 kb on - strandat 537.182 kb on - strand, within CSW01_17230at 537.183 kb on - strand, within CSW01_17230at 537.237 kb on - strand, within CSW01_17230at 537.237 kb on - strand, within CSW01_17230at 537.241 kb on + strand, within CSW01_17230at 537.249 kb on - strand, within CSW01_17230at 537.320 kb on + strand, within CSW01_17230at 537.336 kb on + strand, within CSW01_17230at 537.405 kb on - strand, within CSW01_17230at 537.415 kb on - strand, within CSW01_17230at 537.518 kb on - strand, within CSW01_17230at 537.519 kb on + strand, within CSW01_17230at 537.520 kb on + strand, within CSW01_17230at 537.528 kb on - strand, within CSW01_17230at 537.562 kb on - strand, within CSW01_17230at 537.573 kb on + strand, within CSW01_17230at 537.581 kb on - strand, within CSW01_17230at 537.661 kb on + strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230at 538.165 kb on + strandat 538.165 kb on + strandat 538.173 kb on + strandat 538.460 kb on + strandat 538.460 kb on + strandat 538.538 kb on + strand, within CSW01_17235at 538.573 kb on + strand, within CSW01_17235at 538.573 kb on + strand, within CSW01_17235at 538.581 kb on - strand, within CSW01_17235at 538.581 kb on - strand, within CSW01_17235at 538.592 kb on + strand, within CSW01_17235at 538.637 kb on - strand, within CSW01_17235at 538.699 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.967 kb on + strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 539.087 kb on + strand, within CSW01_17235at 539.095 kb on - strand, within CSW01_17235at 539.115 kb on + strand, within CSW01_17235

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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536,092 - CSW01_17225 0.42 +0.3
536,111 + CSW01_17225 0.43 -2.7
536,121 + CSW01_17225 0.44 +0.7
536,121 + CSW01_17225 0.44 +0.5
536,124 - CSW01_17225 0.44 -1.6
536,124 - CSW01_17225 0.44 +1.3
536,129 - CSW01_17225 0.44 +0.8
536,129 - CSW01_17225 0.44 -1.1
536,129 - CSW01_17225 0.44 +0.3
536,131 + CSW01_17225 0.44 +0.5
536,257 + CSW01_17225 0.52 -0.9
536,262 + CSW01_17225 0.52 -0.3
536,262 + CSW01_17225 0.52 -1.0
536,265 - CSW01_17225 0.52 +1.0
536,265 - CSW01_17225 0.52 +1.5
536,270 - CSW01_17225 0.52 +1.5
536,270 - CSW01_17225 0.52 -0.5
536,270 - CSW01_17225 0.52 +0.6
536,270 - CSW01_17225 0.52 +2.0
536,392 - CSW01_17225 0.59 -0.5
536,497 - CSW01_17225 0.65 -0.9
536,500 + CSW01_17225 0.65 -0.5
536,500 + CSW01_17225 0.65 +0.7
536,500 + CSW01_17225 0.65 +1.5
536,508 - CSW01_17225 0.66 -0.3
536,530 - CSW01_17225 0.67 -0.2
536,621 - CSW01_17225 0.72 -0.5
536,665 + CSW01_17225 0.74 +0.2
536,691 + CSW01_17225 0.76 +0.3
536,787 - CSW01_17225 0.81 +0.5
536,895 + CSW01_17225 0.87 -0.7
537,030 + +1.3
537,064 + +1.8
537,072 - +0.2
537,120 + -1.7
537,133 - -0.6
537,182 - CSW01_17230 0.11 +0.4
537,183 - CSW01_17230 0.11 +0.8
537,237 - CSW01_17230 0.15 -1.1
537,237 - CSW01_17230 0.15 +2.1
537,241 + CSW01_17230 0.16 -1.2
537,249 - CSW01_17230 0.16 -1.7
537,320 + CSW01_17230 0.22 +0.5
537,336 + CSW01_17230 0.24 -1.2
537,405 - CSW01_17230 0.29 +0.3
537,415 - CSW01_17230 0.30 +0.2
537,518 - CSW01_17230 0.39 -2.6
537,519 + CSW01_17230 0.39 -0.8
537,520 + CSW01_17230 0.39 -2.0
537,528 - CSW01_17230 0.39 +0.0
537,562 - CSW01_17230 0.42 -2.2
537,573 + CSW01_17230 0.43 +1.0
537,581 - CSW01_17230 0.44 -1.9
537,661 + CSW01_17230 0.50 -1.6
537,820 - CSW01_17230 0.63 +0.8
537,820 - CSW01_17230 0.63 -2.4
538,165 + +0.8
538,165 + -0.5
538,173 + +0.4
538,460 + +2.7
538,460 + +1.4
538,538 + CSW01_17235 0.12 -2.9
538,573 + CSW01_17235 0.15 +0.3
538,573 + CSW01_17235 0.15 -1.0
538,581 - CSW01_17235 0.16 +1.0
538,581 - CSW01_17235 0.16 +1.5
538,592 + CSW01_17235 0.17 -0.3
538,637 - CSW01_17235 0.21 -1.8
538,699 + CSW01_17235 0.28 +0.2
538,929 + CSW01_17235 0.50 -0.2
538,929 + CSW01_17235 0.50 -2.1
538,937 - CSW01_17235 0.51 -0.8
538,937 - CSW01_17235 0.51 -1.5
538,937 - CSW01_17235 0.51 +0.2
538,937 - CSW01_17235 0.51 -1.5
538,937 - CSW01_17235 0.51 -1.8
538,937 - CSW01_17235 0.51 -1.6
538,967 + CSW01_17235 0.54 +0.4
538,970 - CSW01_17235 0.54 -1.8
538,970 - CSW01_17235 0.54 -1.8
539,087 + CSW01_17235 0.66 +0.4
539,095 - CSW01_17235 0.66 +0.3
539,115 + CSW01_17235 0.68 -2.4

Or see this region's nucleotide sequence