Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17130 and CSW01_17135 overlap by 87 nucleotides CSW01_17135 and CSW01_17140 are separated by 8 nucleotides CSW01_17140 and CSW01_17145 are separated by 115 nucleotides CSW01_17145 and CSW01_17150 are separated by 85 nucleotides
CSW01_17130: CSW01_17130 - Zn-dependent protease, at 518,177 to 518,968
_17130
CSW01_17135: CSW01_17135 - hypothetical protein, at 518,882 to 519,071
_17135
CSW01_17140: CSW01_17140 - urease, at 519,080 to 519,562
_17140
CSW01_17145: CSW01_17145 - ABC transporter substrate-binding protein, at 519,678 to 520,463
_17145
CSW01_17150: CSW01_17150 - thiol:disulfide oxidoreductase, at 520,549 to 521,217
_17150
Position (kb) 519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 518.213 kb on + strand at 518.213 kb on + strand at 518.363 kb on + strand, within CSW01_17130 at 518.380 kb on - strand, within CSW01_17130 at 518.423 kb on - strand, within CSW01_17130 at 518.506 kb on + strand, within CSW01_17130 at 518.506 kb on + strand, within CSW01_17130 at 518.622 kb on + strand, within CSW01_17130 at 518.705 kb on + strand, within CSW01_17130 at 518.705 kb on - strand, within CSW01_17130 at 518.808 kb on + strand, within CSW01_17130 at 518.816 kb on - strand, within CSW01_17130 at 518.816 kb on - strand, within CSW01_17130 at 518.856 kb on + strand, within CSW01_17130 at 518.866 kb on + strand, within CSW01_17130 at 518.866 kb on + strand, within CSW01_17130 at 518.874 kb on - strand, within CSW01_17130 at 518.889 kb on + strand at 518.897 kb on - strand at 518.897 kb on - strand at 518.925 kb on - strand at 518.999 kb on - strand, within CSW01_17135 at 518.999 kb on - strand, within CSW01_17135 at 519.014 kb on - strand, within CSW01_17135 at 519.416 kb on + strand, within CSW01_17140 at 519.476 kb on - strand, within CSW01_17140 at 519.476 kb on - strand, within CSW01_17140 at 519.499 kb on + strand, within CSW01_17140 at 519.507 kb on - strand, within CSW01_17140 at 519.507 kb on - strand, within CSW01_17140 at 519.591 kb on + strand at 519.668 kb on - strand at 519.714 kb on + strand at 519.883 kb on - strand, within CSW01_17145 at 520.371 kb on - strand, within CSW01_17145 at 520.410 kb on - strand at 520.410 kb on - strand at 520.458 kb on + strand at 520.495 kb on + strand at 520.497 kb on + strand at 520.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 518,213 + +1.1 518,213 + -1.0 518,363 + CSW01_17130 0.23 +0.4 518,380 - CSW01_17130 0.26 +0.7 518,423 - CSW01_17130 0.31 -1.4 518,506 + CSW01_17130 0.42 -2.5 518,506 + CSW01_17130 0.42 +2.6 518,622 + CSW01_17130 0.56 +1.2 518,705 + CSW01_17130 0.67 +1.6 518,705 - CSW01_17130 0.67 +0.5 518,808 + CSW01_17130 0.80 +1.3 518,816 - CSW01_17130 0.81 -0.4 518,816 - CSW01_17130 0.81 +0.2 518,856 + CSW01_17130 0.86 -2.3 518,866 + CSW01_17130 0.87 -0.2 518,866 + CSW01_17130 0.87 +0.0 518,874 - CSW01_17130 0.88 -0.2 518,889 + +0.1 518,897 - -0.4 518,897 - +1.2 518,925 - -0.5 518,999 - CSW01_17135 0.62 +0.6 518,999 - CSW01_17135 0.62 -0.3 519,014 - CSW01_17135 0.69 +0.9 519,416 + CSW01_17140 0.70 -0.9 519,476 - CSW01_17140 0.82 +1.3 519,476 - CSW01_17140 0.82 -0.3 519,499 + CSW01_17140 0.87 +0.5 519,507 - CSW01_17140 0.88 +1.5 519,507 - CSW01_17140 0.88 +2.4 519,591 + +0.8 519,668 - +0.8 519,714 + +0.6 519,883 - CSW01_17145 0.26 +0.5 520,371 - CSW01_17145 0.88 -2.9 520,410 - +0.6 520,410 - -1.4 520,458 + -1.7 520,495 + +1.4 520,497 + +1.0 520,503 - -2.1
Or see this region's nucleotide sequence