Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16985

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16975 and CSW01_16980 are separated by 53 nucleotidesCSW01_16980 and CSW01_16985 are separated by 167 nucleotidesCSW01_16985 and CSW01_16990 are separated by 88 nucleotidesCSW01_16990 and CSW01_16995 are separated by 150 nucleotides CSW01_16975: CSW01_16975 - site-2 protease family protein, at 484,818 to 485,900 _16975 CSW01_16980: CSW01_16980 - hypothetical protein, at 485,954 to 486,184 _16980 CSW01_16985: CSW01_16985 - 9-hexadecenoic acid cis-trans isomerase, at 486,352 to 488,652 _16985 CSW01_16990: CSW01_16990 - hypothetical protein, at 488,741 to 488,914 _16990 CSW01_16995: CSW01_16995 - MFS transporter, at 489,065 to 490,297 _16995 Position (kb) 486 487 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 485.358 kb on - strand, within CSW01_16975at 485.480 kb on - strand, within CSW01_16975at 485.506 kb on - strand, within CSW01_16975at 485.506 kb on - strand, within CSW01_16975at 485.684 kb on - strand, within CSW01_16975at 485.685 kb on - strand, within CSW01_16975at 485.804 kb on - strandat 485.932 kb on + strandat 485.934 kb on + strandat 485.984 kb on + strand, within CSW01_16980at 486.009 kb on + strand, within CSW01_16980at 486.009 kb on + strand, within CSW01_16980at 486.122 kb on - strand, within CSW01_16980at 486.138 kb on + strand, within CSW01_16980at 486.190 kb on - strandat 486.224 kb on + strandat 486.232 kb on - strandat 486.232 kb on - strandat 486.291 kb on + strandat 486.397 kb on + strandat 486.558 kb on + strandat 486.629 kb on + strand, within CSW01_16985at 486.686 kb on + strand, within CSW01_16985at 486.686 kb on + strand, within CSW01_16985at 486.686 kb on + strand, within CSW01_16985at 486.855 kb on + strand, within CSW01_16985at 486.927 kb on + strand, within CSW01_16985at 486.972 kb on - strand, within CSW01_16985at 487.008 kb on - strand, within CSW01_16985at 487.209 kb on + strand, within CSW01_16985at 487.250 kb on + strand, within CSW01_16985at 487.379 kb on + strand, within CSW01_16985at 487.484 kb on + strand, within CSW01_16985at 487.544 kb on - strand, within CSW01_16985at 487.645 kb on - strand, within CSW01_16985at 487.701 kb on + strand, within CSW01_16985at 487.917 kb on - strand, within CSW01_16985at 487.917 kb on - strand, within CSW01_16985at 487.938 kb on - strand, within CSW01_16985at 487.945 kb on + strand, within CSW01_16985at 487.953 kb on - strand, within CSW01_16985at 488.092 kb on + strand, within CSW01_16985at 488.097 kb on + strand, within CSW01_16985at 488.097 kb on + strand, within CSW01_16985at 488.102 kb on + strand, within CSW01_16985at 488.148 kb on + strand, within CSW01_16985at 488.373 kb on - strand, within CSW01_16985at 488.426 kb on - strandat 488.434 kb on + strandat 488.581 kb on + strandat 488.581 kb on - strandat 488.605 kb on + strandat 488.613 kb on - strandat 488.615 kb on + strandat 488.623 kb on - strandat 488.628 kb on + strandat 488.635 kb on + strandat 488.635 kb on + strandat 488.643 kb on - strandat 488.817 kb on + strand, within CSW01_16990at 488.909 kb on + strandat 488.950 kb on - strandat 489.080 kb on - strandat 489.107 kb on - strandat 489.135 kb on - strandat 489.200 kb on + strand, within CSW01_16995at 489.200 kb on + strand, within CSW01_16995at 489.203 kb on - strand, within CSW01_16995at 489.517 kb on + strand, within CSW01_16995at 489.523 kb on - strand, within CSW01_16995at 489.609 kb on - strand, within CSW01_16995at 489.613 kb on + strand, within CSW01_16995at 489.621 kb on + strand, within CSW01_16995at 489.621 kb on + strand, within CSW01_16995at 489.634 kb on - strand, within CSW01_16995at 489.634 kb on - strand, within CSW01_16995

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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485,358 - CSW01_16975 0.50 -0.1
485,480 - CSW01_16975 0.61 +0.6
485,506 - CSW01_16975 0.64 +1.0
485,506 - CSW01_16975 0.64 -2.1
485,684 - CSW01_16975 0.80 +2.6
485,685 - CSW01_16975 0.80 +0.6
485,804 - -3.0
485,932 + +0.8
485,934 + +0.1
485,984 + CSW01_16980 0.13 +1.2
486,009 + CSW01_16980 0.24 -2.4
486,009 + CSW01_16980 0.24 +2.0
486,122 - CSW01_16980 0.73 -2.3
486,138 + CSW01_16980 0.80 +0.7
486,190 - +0.1
486,224 + -2.5
486,232 - +0.4
486,232 - -1.6
486,291 + +0.8
486,397 + +0.1
486,558 + +0.3
486,629 + CSW01_16985 0.12 -1.1
486,686 + CSW01_16985 0.15 -1.5
486,686 + CSW01_16985 0.15 -2.9
486,686 + CSW01_16985 0.15 -2.8
486,855 + CSW01_16985 0.22 -2.5
486,927 + CSW01_16985 0.25 -1.0
486,972 - CSW01_16985 0.27 -2.2
487,008 - CSW01_16985 0.29 +0.7
487,209 + CSW01_16985 0.37 -0.4
487,250 + CSW01_16985 0.39 +1.1
487,379 + CSW01_16985 0.45 -1.7
487,484 + CSW01_16985 0.49 +0.1
487,544 - CSW01_16985 0.52 +0.4
487,645 - CSW01_16985 0.56 +1.0
487,701 + CSW01_16985 0.59 -2.3
487,917 - CSW01_16985 0.68 -1.2
487,917 - CSW01_16985 0.68 -1.0
487,938 - CSW01_16985 0.69 +0.7
487,945 + CSW01_16985 0.69 +0.6
487,953 - CSW01_16985 0.70 -2.0
488,092 + CSW01_16985 0.76 -1.1
488,097 + CSW01_16985 0.76 +1.6
488,097 + CSW01_16985 0.76 +0.5
488,102 + CSW01_16985 0.76 +2.0
488,148 + CSW01_16985 0.78 -0.0
488,373 - CSW01_16985 0.88 +0.6
488,426 - +0.1
488,434 + +1.0
488,581 + -0.7
488,581 - +0.4
488,605 + -1.5
488,613 - -0.4
488,615 + +1.3
488,623 - -1.1
488,628 + -0.0
488,635 + +1.2
488,635 + -0.7
488,643 - -2.5
488,817 + CSW01_16990 0.44 +0.1
488,909 + +0.8
488,950 - -2.7
489,080 - -1.6
489,107 - -2.7
489,135 - +0.4
489,200 + CSW01_16995 0.11 -2.0
489,200 + CSW01_16995 0.11 -0.9
489,203 - CSW01_16995 0.11 -0.7
489,517 + CSW01_16995 0.37 -2.7
489,523 - CSW01_16995 0.37 -0.1
489,609 - CSW01_16995 0.44 +0.2
489,613 + CSW01_16995 0.44 -2.4
489,621 + CSW01_16995 0.45 +1.0
489,621 + CSW01_16995 0.45 -0.2
489,634 - CSW01_16995 0.46 +0.4
489,634 - CSW01_16995 0.46 +0.4

Or see this region's nucleotide sequence