Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16960 and CSW01_16965 are separated by 303 nucleotides CSW01_16965 and CSW01_16970 are separated by 149 nucleotides CSW01_16970 and CSW01_16975 are separated by 183 nucleotides
CSW01_16960: CSW01_16960 - DUF475 domain-containing protein, at 482,461 to 483,417
_16960
CSW01_16965: CSW01_16965 - hypothetical protein, at 483,721 to 483,909
_16965
CSW01_16970: CSW01_16970 - alkylphosphonate utilization protein, at 484,059 to 484,634
_16970
CSW01_16975: CSW01_16975 - site-2 protease family protein, at 484,818 to 485,900
_16975
Position (kb) 483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.769 kb on - strand, within CSW01_16960 at 482.814 kb on + strand, within CSW01_16960 at 482.822 kb on - strand, within CSW01_16960 at 482.943 kb on + strand, within CSW01_16960 at 483.041 kb on + strand, within CSW01_16960 at 483.057 kb on - strand, within CSW01_16960 at 483.178 kb on + strand, within CSW01_16960 at 483.370 kb on - strand at 483.370 kb on - strand at 483.746 kb on - strand, within CSW01_16965 at 483.911 kb on + strand at 484.069 kb on + strand at 484.102 kb on - strand at 484.142 kb on + strand, within CSW01_16970 at 484.150 kb on - strand, within CSW01_16970 at 484.157 kb on + strand, within CSW01_16970 at 484.157 kb on - strand, within CSW01_16970 at 484.165 kb on - strand, within CSW01_16970 at 484.165 kb on - strand, within CSW01_16970 at 484.392 kb on + strand, within CSW01_16970 at 484.410 kb on - strand, within CSW01_16970 at 484.527 kb on - strand, within CSW01_16970 at 484.559 kb on + strand, within CSW01_16970 at 484.594 kb on - strand at 484.787 kb on - strand at 484.824 kb on - strand at 484.834 kb on - strand at 484.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 482,769 - CSW01_16960 0.32 +0.0 482,814 + CSW01_16960 0.37 -0.5 482,822 - CSW01_16960 0.38 -0.5 482,943 + CSW01_16960 0.50 +1.9 483,041 + CSW01_16960 0.61 +0.7 483,057 - CSW01_16960 0.62 -1.8 483,178 + CSW01_16960 0.75 -0.3 483,370 - -0.2 483,370 - -3.4 483,746 - CSW01_16965 0.13 -0.2 483,911 + +0.4 484,069 + -2.1 484,102 - +0.9 484,142 + CSW01_16970 0.14 +0.8 484,150 - CSW01_16970 0.16 +2.3 484,157 + CSW01_16970 0.17 +0.3 484,157 - CSW01_16970 0.17 -0.4 484,165 - CSW01_16970 0.18 -1.8 484,165 - CSW01_16970 0.18 +1.0 484,392 + CSW01_16970 0.58 -0.7 484,410 - CSW01_16970 0.61 -0.5 484,527 - CSW01_16970 0.81 +0.3 484,559 + CSW01_16970 0.87 -2.4 484,594 - +1.8 484,787 - +0.2 484,824 - +0.6 484,834 - +0.3 484,834 - -1.7
Or see this region's nucleotide sequence