Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16330 and CSW01_16335 are separated by 197 nucleotides CSW01_16335 and CSW01_16340 overlap by 86 nucleotides CSW01_16340 and CSW01_16345 are separated by 193 nucleotides CSW01_16345 and CSW01_16350 overlap by 8 nucleotides CSW01_16350 and CSW01_16355 are separated by 25 nucleotides
CSW01_16330: CSW01_16330 - DUF2971 domain-containing protein, at 390,696 to 391,553
_16330
CSW01_16335: CSW01_16335 - hypothetical protein, at 391,751 to 391,934
_16335
CSW01_16340: CSW01_16340 - DUF645 domain-containing protein, at 391,849 to 392,028
_16340
CSW01_16345: CSW01_16345 - N-acetyltransferase, at 392,222 to 392,737
_16345
CSW01_16350: CSW01_16350 - plasmid stabilization protein, at 392,730 to 392,801
_16350
CSW01_16355: CSW01_16355 - acetyltransferase, at 392,827 to 393,006
_16355
Position (kb) 391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 390.751 kb on + strand at 390.752 kb on - strand at 390.759 kb on - strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.760 kb on + strand at 390.761 kb on + strand at 390.761 kb on + strand at 390.765 kb on + strand at 390.768 kb on - strand at 390.768 kb on - strand at 390.769 kb on - strand at 390.770 kb on + strand at 390.770 kb on + strand at 390.778 kb on - strand at 390.778 kb on - strand at 390.789 kb on + strand, within CSW01_16330 at 390.802 kb on + strand, within CSW01_16330 at 390.939 kb on + strand, within CSW01_16330 at 390.947 kb on - strand, within CSW01_16330 at 390.953 kb on + strand, within CSW01_16330 at 390.953 kb on + strand, within CSW01_16330 at 390.953 kb on + strand, within CSW01_16330 at 390.953 kb on + strand, within CSW01_16330 at 390.953 kb on + strand, within CSW01_16330 at 390.961 kb on - strand, within CSW01_16330 at 390.961 kb on - strand, within CSW01_16330 at 390.961 kb on - strand, within CSW01_16330 at 390.970 kb on - strand, within CSW01_16330 at 391.004 kb on - strand, within CSW01_16330 at 391.004 kb on - strand, within CSW01_16330 at 391.080 kb on + strand, within CSW01_16330 at 391.080 kb on + strand, within CSW01_16330 at 391.080 kb on + strand, within CSW01_16330 at 391.088 kb on - strand, within CSW01_16330 at 391.088 kb on - strand, within CSW01_16330 at 391.088 kb on - strand, within CSW01_16330 at 391.089 kb on + strand, within CSW01_16330 at 391.090 kb on + strand, within CSW01_16330 at 391.124 kb on - strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.188 kb on + strand, within CSW01_16330 at 391.196 kb on - strand, within CSW01_16330 at 391.196 kb on - strand, within CSW01_16330 at 391.196 kb on - strand, within CSW01_16330 at 391.196 kb on - strand, within CSW01_16330 at 391.196 kb on - strand, within CSW01_16330 at 391.276 kb on - strand, within CSW01_16330 at 391.308 kb on + strand, within CSW01_16330 at 391.308 kb on + strand, within CSW01_16330 at 391.326 kb on + strand, within CSW01_16330 at 391.334 kb on - strand, within CSW01_16330 at 391.348 kb on - strand, within CSW01_16330 at 391.367 kb on + strand, within CSW01_16330 at 391.438 kb on - strand, within CSW01_16330 at 391.568 kb on - strand at 392.094 kb on + strand at 392.145 kb on + strand at 392.611 kb on + strand, within CSW01_16345 at 392.796 kb on + strand at 392.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 390,751 + +0.3 390,752 - +0.6 390,759 - -0.5 390,760 + -0.4 390,760 + +2.1 390,760 + +0.1 390,760 + +0.6 390,761 + +1.0 390,761 + -1.8 390,765 + -2.1 390,768 - -0.9 390,768 - -0.7 390,769 - -0.3 390,770 + -1.1 390,770 + +0.5 390,778 - -0.6 390,778 - -0.6 390,789 + CSW01_16330 0.11 -0.2 390,802 + CSW01_16330 0.12 +1.7 390,939 + CSW01_16330 0.28 -0.1 390,947 - CSW01_16330 0.29 +0.9 390,953 + CSW01_16330 0.30 -0.0 390,953 + CSW01_16330 0.30 -0.6 390,953 + CSW01_16330 0.30 -2.0 390,953 + CSW01_16330 0.30 +0.1 390,953 + CSW01_16330 0.30 -1.1 390,961 - CSW01_16330 0.31 -0.5 390,961 - CSW01_16330 0.31 -0.7 390,961 - CSW01_16330 0.31 +0.2 390,970 - CSW01_16330 0.32 +0.2 391,004 - CSW01_16330 0.36 +0.7 391,004 - CSW01_16330 0.36 -1.0 391,080 + CSW01_16330 0.45 -0.1 391,080 + CSW01_16330 0.45 -0.4 391,080 + CSW01_16330 0.45 -0.0 391,088 - CSW01_16330 0.46 +0.0 391,088 - CSW01_16330 0.46 +0.6 391,088 - CSW01_16330 0.46 -0.5 391,089 + CSW01_16330 0.46 +1.7 391,090 + CSW01_16330 0.46 -0.5 391,124 - CSW01_16330 0.50 -0.2 391,188 + CSW01_16330 0.57 +0.1 391,188 + CSW01_16330 0.57 -1.8 391,188 + CSW01_16330 0.57 +1.4 391,188 + CSW01_16330 0.57 -0.8 391,188 + CSW01_16330 0.57 +0.8 391,188 + CSW01_16330 0.57 +0.1 391,196 - CSW01_16330 0.58 -0.0 391,196 - CSW01_16330 0.58 -0.7 391,196 - CSW01_16330 0.58 -3.0 391,196 - CSW01_16330 0.58 +0.6 391,196 - CSW01_16330 0.58 -1.4 391,276 - CSW01_16330 0.68 -1.4 391,308 + CSW01_16330 0.71 -1.8 391,308 + CSW01_16330 0.71 -0.2 391,326 + CSW01_16330 0.73 -0.1 391,334 - CSW01_16330 0.74 +0.3 391,348 - CSW01_16330 0.76 +0.6 391,367 + CSW01_16330 0.78 +3.1 391,438 - CSW01_16330 0.86 -0.3 391,568 - -0.3 392,094 + -0.5 392,145 + -1.5 392,611 + CSW01_16345 0.75 -0.6 392,796 + +0.6 392,830 - +0.2
Or see this region's nucleotide sequence