Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16230

Experiment: ICP3_phage_4.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16220 and CSW01_16225 are separated by 138 nucleotidesCSW01_16225 and CSW01_16230 are separated by 304 nucleotidesCSW01_16230 and CSW01_16235 are separated by 41 nucleotidesCSW01_16235 and CSW01_16240 overlap by 19 nucleotides CSW01_16220: CSW01_16220 - N-acetyltransferase, at 382,113 to 382,649 _16220 CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105 _16225 CSW01_16230: CSW01_16230 - DUF645 domain-containing protein, at 383,410 to 383,592 _16230 CSW01_16235: CSW01_16235 - hypothetical protein, at 383,634 to 383,729 _16235 CSW01_16240: CSW01_16240 - hypothetical protein, at 383,711 to 384,496 _16240 Position (kb) 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1at 382.793 kb on - strandat 382.928 kb on + strand, within CSW01_16225at 383.465 kb on - strand, within CSW01_16230at 383.492 kb on + strand, within CSW01_16230at 383.500 kb on - strand, within CSW01_16230at 383.506 kb on + strand, within CSW01_16230at 383.551 kb on - strand, within CSW01_16230at 383.837 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.867 kb on + strand, within CSW01_16240at 383.968 kb on - strand, within CSW01_16240at 384.010 kb on + strand, within CSW01_16240at 384.018 kb on - strand, within CSW01_16240at 384.018 kb on - strand, within CSW01_16240at 384.327 kb on + strand, within CSW01_16240at 384.335 kb on - strand, within CSW01_16240at 384.379 kb on + strand, within CSW01_16240at 384.399 kb on - strand, within CSW01_16240at 384.407 kb on + strand, within CSW01_16240at 384.411 kb on + strand, within CSW01_16240at 384.424 kb on - strandat 384.458 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
remove
382,793 - -0.4
382,928 + CSW01_16225 0.44 +0.3
383,465 - CSW01_16230 0.30 -2.9
383,492 + CSW01_16230 0.45 +0.8
383,500 - CSW01_16230 0.49 +0.7
383,506 + CSW01_16230 0.52 +0.4
383,551 - CSW01_16230 0.77 +1.5
383,837 - CSW01_16240 0.16 +0.8
383,859 - CSW01_16240 0.19 -1.8
383,859 - CSW01_16240 0.19 -1.2
383,859 - CSW01_16240 0.19 +0.9
383,867 + CSW01_16240 0.20 -0.5
383,968 - CSW01_16240 0.33 -0.7
384,010 + CSW01_16240 0.38 +0.7
384,018 - CSW01_16240 0.39 -0.8
384,018 - CSW01_16240 0.39 -1.5
384,327 + CSW01_16240 0.78 +0.3
384,335 - CSW01_16240 0.79 -0.4
384,379 + CSW01_16240 0.85 -1.9
384,399 - CSW01_16240 0.88 +0.9
384,407 + CSW01_16240 0.89 +1.3
384,411 + CSW01_16240 0.89 -1.1
384,424 - -1.3
384,458 - -2.8

Or see this region's nucleotide sequence