Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16185

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16175 and CSW01_16180 are separated by 150 nucleotidesCSW01_16180 and CSW01_16185 overlap by 1 nucleotidesCSW01_16185 and CSW01_16190 are separated by 118 nucleotidesCSW01_16190 and CSW01_16195 overlap by 86 nucleotidesCSW01_16195 and CSW01_16200 are separated by 195 nucleotides CSW01_16175: CSW01_16175 - hypothetical protein, at 377,952 to 378,410 _16175 CSW01_16180: CSW01_16180 - hypothetical protein, at 378,561 to 378,923 _16180 CSW01_16185: CSW01_16185 - DUF3265 domain-containing protein, at 378,923 to 379,009 _16185 CSW01_16190: CSW01_16190 - hypothetical protein, at 379,128 to 379,311 _16190 CSW01_16195: CSW01_16195 - DUF645 domain-containing protein, at 379,226 to 379,405 _16195 CSW01_16200: CSW01_16200 - hypothetical protein, at 379,601 to 380,254 _16200 Position (kb) 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 378.042 kb on + strand, within CSW01_16175at 378.078 kb on + strand, within CSW01_16175at 378.109 kb on - strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.120 kb on + strand, within CSW01_16175at 378.130 kb on + strand, within CSW01_16175at 378.182 kb on + strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.257 kb on - strand, within CSW01_16175at 378.303 kb on - strand, within CSW01_16175at 378.587 kb on + strandat 378.587 kb on + strandat 378.590 kb on - strandat 378.678 kb on + strand, within CSW01_16180at 378.678 kb on + strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.698 kb on + strand, within CSW01_16180at 378.706 kb on - strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.767 kb on + strand, within CSW01_16180at 378.767 kb on + strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.791 kb on - strand, within CSW01_16180at 378.791 kb on - strand, within CSW01_16180at 378.851 kb on + strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.939 kb on + strand, within CSW01_16185at 378.991 kb on + strand, within CSW01_16185at 378.998 kb on + strand, within CSW01_16185at 379.184 kb on + strand, within CSW01_16190at 379.290 kb on - strandat 379.363 kb on + strand, within CSW01_16195at 379.389 kb on - strandat 379.523 kb on + strandat 379.523 kb on + strandat 379.574 kb on - strandat 379.579 kb on + strandat 379.585 kb on - strandat 379.589 kb on + strandat 379.597 kb on + strandat 379.597 kb on + strandat 379.597 kb on - strandat 379.605 kb on + strandat 379.605 kb on - strandat 379.605 kb on - strandat 379.607 kb on - strandat 379.613 kb on - strandat 379.813 kb on - strand, within CSW01_16200at 379.827 kb on + strand, within CSW01_16200at 379.827 kb on + strand, within CSW01_16200at 379.859 kb on + strand, within CSW01_16200at 379.871 kb on + strand, within CSW01_16200at 379.871 kb on - strand, within CSW01_16200at 379.873 kb on + strand, within CSW01_16200at 379.879 kb on - strand, within CSW01_16200at 379.900 kb on + strand, within CSW01_16200at 379.997 kb on + strand, within CSW01_16200

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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378,042 + CSW01_16175 0.20 -0.9
378,078 + CSW01_16175 0.27 -2.2
378,109 - CSW01_16175 0.34 -2.2
378,113 + CSW01_16175 0.35 +0.4
378,113 + CSW01_16175 0.35 +1.9
378,113 + CSW01_16175 0.35 -0.2
378,113 + CSW01_16175 0.35 -0.3
378,113 + CSW01_16175 0.35 -3.0
378,120 + CSW01_16175 0.37 -1.5
378,130 + CSW01_16175 0.39 +1.6
378,182 + CSW01_16175 0.50 -0.6
378,190 - CSW01_16175 0.52 +1.4
378,190 - CSW01_16175 0.52 +1.0
378,190 - CSW01_16175 0.52 +0.9
378,190 - CSW01_16175 0.52 +0.8
378,257 - CSW01_16175 0.66 +1.1
378,303 - CSW01_16175 0.76 -1.9
378,587 + +0.7
378,587 + -2.1
378,590 - -1.3
378,678 + CSW01_16180 0.32 +1.0
378,678 + CSW01_16180 0.32 -0.6
378,686 - CSW01_16180 0.34 +0.9
378,686 - CSW01_16180 0.34 -1.8
378,686 - CSW01_16180 0.34 +1.5
378,698 + CSW01_16180 0.38 +0.6
378,706 - CSW01_16180 0.40 -3.3
378,742 + CSW01_16180 0.50 +1.1
378,742 + CSW01_16180 0.50 +1.9
378,742 + CSW01_16180 0.50 -0.8
378,767 + CSW01_16180 0.57 +0.9
378,767 + CSW01_16180 0.57 +0.1
378,775 - CSW01_16180 0.59 -0.5
378,775 - CSW01_16180 0.59 +0.4
378,775 - CSW01_16180 0.59 -0.0
378,783 + CSW01_16180 0.61 -0.3
378,783 + CSW01_16180 0.61 +0.5
378,783 + CSW01_16180 0.61 -3.1
378,783 + CSW01_16180 0.61 +0.4
378,791 - CSW01_16180 0.63 +1.2
378,791 - CSW01_16180 0.63 -0.8
378,851 + CSW01_16180 0.80 -0.7
378,859 - CSW01_16180 0.82 -2.0
378,859 - CSW01_16180 0.82 -1.0
378,859 - CSW01_16180 0.82 +0.4
378,859 - CSW01_16180 0.82 -2.5
378,939 + CSW01_16185 0.18 -1.7
378,991 + CSW01_16185 0.78 -0.9
378,998 + CSW01_16185 0.86 +0.0
379,184 + CSW01_16190 0.30 -2.9
379,290 - +1.1
379,363 + CSW01_16195 0.76 -1.0
379,389 - -2.3
379,523 + -3.1
379,523 + -0.1
379,574 - +1.1
379,579 + -1.9
379,585 - +0.2
379,589 + +0.5
379,597 + -0.6
379,597 + +0.5
379,597 - -3.6
379,605 + -2.5
379,605 - -0.9
379,605 - +1.2
379,607 - -2.8
379,613 - -0.3
379,813 - CSW01_16200 0.32 -0.5
379,827 + CSW01_16200 0.35 -0.1
379,827 + CSW01_16200 0.35 -0.4
379,859 + CSW01_16200 0.39 +0.1
379,871 + CSW01_16200 0.41 -1.0
379,871 - CSW01_16200 0.41 -1.4
379,873 + CSW01_16200 0.42 -0.8
379,879 - CSW01_16200 0.43 -2.0
379,900 + CSW01_16200 0.46 +1.9
379,997 + CSW01_16200 0.61 +1.6

Or see this region's nucleotide sequence