Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15930

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15925 and CSW01_15930 overlap by 68 nucleotidesCSW01_15930 and CSW01_15935 are separated by 60 nucleotidesCSW01_15935 and CSW01_15940 overlap by 4 nucleotides CSW01_15925: CSW01_15925 - hypothetical protein, at 353,043 to 354,065 _15925 CSW01_15930: CSW01_15930 - hypothetical protein, at 353,998 to 354,612 _15930 CSW01_15935: CSW01_15935 - chemotaxis protein, at 354,673 to 355,368 _15935 CSW01_15940: CSW01_15940 - IS3 family transposase, at 355,365 to 356,542 _15940 Position (kb) 353 354 355Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 353.048 kb on + strandat 353.056 kb on - strandat 353.216 kb on + strand, within CSW01_15925at 353.234 kb on - strand, within CSW01_15925at 353.286 kb on - strand, within CSW01_15925at 353.287 kb on - strand, within CSW01_15925at 353.324 kb on + strand, within CSW01_15925at 353.342 kb on + strand, within CSW01_15925at 353.349 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.383 kb on - strand, within CSW01_15925at 353.385 kb on + strand, within CSW01_15925at 353.396 kb on + strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.510 kb on + strand, within CSW01_15925at 353.609 kb on + strand, within CSW01_15925at 353.727 kb on - strand, within CSW01_15925at 353.823 kb on + strand, within CSW01_15925at 353.831 kb on + strand, within CSW01_15925at 353.839 kb on - strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.894 kb on - strand, within CSW01_15925at 353.903 kb on + strand, within CSW01_15925at 353.917 kb on - strand, within CSW01_15925at 354.001 kb on + strandat 354.239 kb on - strand, within CSW01_15930at 354.306 kb on + strand, within CSW01_15930at 354.306 kb on + strand, within CSW01_15930at 354.307 kb on + strand, within CSW01_15930at 354.308 kb on + strand, within CSW01_15930at 354.308 kb on + strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.316 kb on - strand, within CSW01_15930at 354.328 kb on - strand, within CSW01_15930at 354.345 kb on + strand, within CSW01_15930at 354.368 kb on + strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.458 kb on - strand, within CSW01_15930at 354.533 kb on - strand, within CSW01_15930at 354.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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353,048 + +1.2
353,056 - -0.3
353,216 + CSW01_15925 0.17 +0.1
353,234 - CSW01_15925 0.19 +0.6
353,286 - CSW01_15925 0.24 -2.4
353,287 - CSW01_15925 0.24 -1.7
353,324 + CSW01_15925 0.27 -2.4
353,342 + CSW01_15925 0.29 +0.4
353,349 + CSW01_15925 0.30 +0.6
353,375 + CSW01_15925 0.32 +1.2
353,375 + CSW01_15925 0.32 -0.9
353,375 + CSW01_15925 0.32 -1.3
353,383 - CSW01_15925 0.33 +1.1
353,385 + CSW01_15925 0.33 -0.6
353,396 + CSW01_15925 0.35 +0.2
353,440 - CSW01_15925 0.39 -1.4
353,440 - CSW01_15925 0.39 -0.0
353,510 + CSW01_15925 0.46 +0.2
353,609 + CSW01_15925 0.55 -0.0
353,727 - CSW01_15925 0.67 +0.2
353,823 + CSW01_15925 0.76 +1.2
353,831 + CSW01_15925 0.77 -1.2
353,839 - CSW01_15925 0.78 -0.2
353,846 + CSW01_15925 0.78 +0.4
353,846 + CSW01_15925 0.78 -0.9
353,846 + CSW01_15925 0.78 -0.4
353,846 + CSW01_15925 0.78 -1.9
353,846 + CSW01_15925 0.78 +0.8
353,854 - CSW01_15925 0.79 -0.3
353,854 - CSW01_15925 0.79 -2.4
353,854 - CSW01_15925 0.79 -0.1
353,894 - CSW01_15925 0.83 +0.7
353,903 + CSW01_15925 0.84 -1.3
353,917 - CSW01_15925 0.85 +0.1
354,001 + +0.3
354,239 - CSW01_15930 0.39 +0.4
354,306 + CSW01_15930 0.50 +2.4
354,306 + CSW01_15930 0.50 -2.5
354,307 + CSW01_15930 0.50 -1.3
354,308 + CSW01_15930 0.50 -1.5
354,308 + CSW01_15930 0.50 +0.5
354,314 - CSW01_15930 0.51 -0.5
354,314 - CSW01_15930 0.51 -0.1
354,314 - CSW01_15930 0.51 -0.3
354,314 - CSW01_15930 0.51 +0.8
354,314 - CSW01_15930 0.51 -0.4
354,314 - CSW01_15930 0.51 -1.6
354,316 - CSW01_15930 0.52 +0.7
354,328 - CSW01_15930 0.54 -3.0
354,345 + CSW01_15930 0.56 +1.1
354,368 + CSW01_15930 0.60 -2.3
354,448 - CSW01_15930 0.73 +0.1
354,448 - CSW01_15930 0.73 +0.2
354,458 - CSW01_15930 0.75 +1.8
354,533 - CSW01_15930 0.87 -2.6
354,557 + -1.6

Or see this region's nucleotide sequence