Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15190

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15180 and CSW01_15185 are separated by 5 nucleotidesCSW01_15185 and CSW01_15190 are separated by 5 nucleotidesCSW01_15190 and CSW01_15195 are separated by 8 nucleotidesCSW01_15195 and CSW01_15200 are separated by 97 nucleotides CSW01_15180: CSW01_15180 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 262,530 to 263,177 _15180 CSW01_15185: CSW01_15185 - Cof-type HAD-IIB family hydrolase, at 263,183 to 264,004 _15185 CSW01_15190: CSW01_15190 - L-ribulose-5-phosphate 4-epimerase, at 264,010 to 264,702 _15190 CSW01_15195: CSW01_15195 - PTS ascorbate-specific transporter subunit IIA, at 264,711 to 265,217 _15195 CSW01_15200: CSW01_15200 - PTS ascorbate transporter subunit IIC, at 265,315 to 267,075 _15200 Position (kb) 264 265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 263.213 kb on + strandat 263.226 kb on - strandat 263.242 kb on + strandat 263.250 kb on - strandat 263.280 kb on + strand, within CSW01_15185at 263.288 kb on - strand, within CSW01_15185at 263.307 kb on + strand, within CSW01_15185at 263.317 kb on + strand, within CSW01_15185at 263.319 kb on + strand, within CSW01_15185at 263.387 kb on + strand, within CSW01_15185at 263.404 kb on + strand, within CSW01_15185at 263.406 kb on + strand, within CSW01_15185at 263.407 kb on - strand, within CSW01_15185at 263.412 kb on - strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.503 kb on + strand, within CSW01_15185at 263.508 kb on - strand, within CSW01_15185at 263.656 kb on - strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.800 kb on - strand, within CSW01_15185at 263.850 kb on + strand, within CSW01_15185at 263.850 kb on + strand, within CSW01_15185at 263.868 kb on + strand, within CSW01_15185at 263.873 kb on - strand, within CSW01_15185at 263.893 kb on + strand, within CSW01_15185at 263.896 kb on + strand, within CSW01_15185at 263.906 kb on - strand, within CSW01_15185at 263.914 kb on - strand, within CSW01_15185at 263.914 kb on - strand, within CSW01_15185at 263.968 kb on - strandat 263.973 kb on - strandat 263.980 kb on + strandat 264.021 kb on - strandat 264.051 kb on + strandat 264.146 kb on + strand, within CSW01_15190at 264.154 kb on - strand, within CSW01_15190at 264.208 kb on - strand, within CSW01_15190at 264.362 kb on - strand, within CSW01_15190at 264.362 kb on - strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.447 kb on - strand, within CSW01_15190at 264.454 kb on + strand, within CSW01_15190at 264.467 kb on - strand, within CSW01_15190at 264.540 kb on - strand, within CSW01_15190at 264.627 kb on + strand, within CSW01_15190at 264.637 kb on - strandat 264.692 kb on - strandat 264.699 kb on + strandat 264.706 kb on - strandat 264.716 kb on - strandat 264.816 kb on - strand, within CSW01_15195at 264.821 kb on - strand, within CSW01_15195at 264.846 kb on + strand, within CSW01_15195at 264.967 kb on - strand, within CSW01_15195at 265.022 kb on + strand, within CSW01_15195at 265.022 kb on + strand, within CSW01_15195at 265.030 kb on - strand, within CSW01_15195at 265.030 kb on - strand, within CSW01_15195at 265.036 kb on - strand, within CSW01_15195at 265.054 kb on - strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.153 kb on - strand, within CSW01_15195at 265.231 kb on + strandat 265.231 kb on + strandat 265.239 kb on - strandat 265.241 kb on + strandat 265.356 kb on - strandat 265.395 kb on - strandat 265.395 kb on - strandat 265.433 kb on + strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.451 kb on - strandat 265.510 kb on + strand, within CSW01_15200at 265.523 kb on - strand, within CSW01_15200at 265.617 kb on - strand, within CSW01_15200at 265.629 kb on - strand, within CSW01_15200at 265.660 kb on - strand, within CSW01_15200at 265.680 kb on + strand, within CSW01_15200at 265.698 kb on - strand, within CSW01_15200

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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263,213 + -1.3
263,226 - +0.8
263,242 + +0.5
263,250 - +0.1
263,280 + CSW01_15185 0.12 -2.4
263,288 - CSW01_15185 0.13 +0.4
263,307 + CSW01_15185 0.15 -0.9
263,317 + CSW01_15185 0.16 -0.6
263,319 + CSW01_15185 0.17 +0.5
263,387 + CSW01_15185 0.25 -0.6
263,404 + CSW01_15185 0.27 -2.7
263,406 + CSW01_15185 0.27 -3.3
263,407 - CSW01_15185 0.27 +0.4
263,412 - CSW01_15185 0.28 -2.0
263,460 + CSW01_15185 0.34 +0.5
263,460 + CSW01_15185 0.34 +0.9
263,503 + CSW01_15185 0.39 +0.9
263,508 - CSW01_15185 0.40 -1.3
263,656 - CSW01_15185 0.58 -0.9
263,792 + CSW01_15185 0.74 -1.5
263,792 + CSW01_15185 0.74 -1.5
263,792 + CSW01_15185 0.74 -0.5
263,800 - CSW01_15185 0.75 -1.8
263,850 + CSW01_15185 0.81 -0.9
263,850 + CSW01_15185 0.81 +0.3
263,868 + CSW01_15185 0.83 -1.2
263,873 - CSW01_15185 0.84 +0.2
263,893 + CSW01_15185 0.86 +0.0
263,896 + CSW01_15185 0.87 +0.3
263,906 - CSW01_15185 0.88 -0.4
263,914 - CSW01_15185 0.89 -0.1
263,914 - CSW01_15185 0.89 +0.3
263,968 - -1.3
263,973 - +0.7
263,980 + -0.7
264,021 - +0.4
264,051 + -1.3
264,146 + CSW01_15190 0.20 -0.6
264,154 - CSW01_15190 0.21 -0.9
264,208 - CSW01_15190 0.29 +0.1
264,362 - CSW01_15190 0.51 -0.5
264,362 - CSW01_15190 0.51 +0.8
264,418 + CSW01_15190 0.59 -3.8
264,418 + CSW01_15190 0.59 -2.2
264,426 - CSW01_15190 0.60 +2.2
264,426 - CSW01_15190 0.60 +0.3
264,426 - CSW01_15190 0.60 -0.4
264,426 - CSW01_15190 0.60 -0.1
264,447 - CSW01_15190 0.63 +0.1
264,454 + CSW01_15190 0.64 -0.4
264,467 - CSW01_15190 0.66 +1.2
264,540 - CSW01_15190 0.76 +0.3
264,627 + CSW01_15190 0.89 -2.6
264,637 - -2.0
264,692 - -0.0
264,699 + +1.4
264,706 - +1.1
264,716 - +1.1
264,816 - CSW01_15195 0.21 -0.3
264,821 - CSW01_15195 0.22 +1.4
264,846 + CSW01_15195 0.27 +0.3
264,967 - CSW01_15195 0.50 -3.5
265,022 + CSW01_15195 0.61 -2.0
265,022 + CSW01_15195 0.61 +0.3
265,030 - CSW01_15195 0.63 -0.5
265,030 - CSW01_15195 0.63 +3.9
265,036 - CSW01_15195 0.64 -0.3
265,054 - CSW01_15195 0.68 +0.6
265,145 + CSW01_15195 0.86 -1.4
265,145 + CSW01_15195 0.86 +1.0
265,145 + CSW01_15195 0.86 +0.5
265,153 - CSW01_15195 0.87 -0.1
265,231 + -0.7
265,231 + +1.2
265,239 - +1.1
265,241 + +1.2
265,356 - -0.2
265,395 - -0.6
265,395 - -1.7
265,433 + -1.6
265,441 - +0.5
265,441 - -1.2
265,441 - +0.3
265,441 - -0.6
265,451 - +0.4
265,510 + CSW01_15200 0.11 -1.3
265,523 - CSW01_15200 0.12 -2.5
265,617 - CSW01_15200 0.17 -0.3
265,629 - CSW01_15200 0.18 -1.7
265,660 - CSW01_15200 0.20 -2.9
265,680 + CSW01_15200 0.21 -0.1
265,698 - CSW01_15200 0.22 -1.5

Or see this region's nucleotide sequence