Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14450

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14445 and CSW01_14450 are separated by 100 nucleotidesCSW01_14450 and CSW01_14455 are separated by 73 nucleotidesCSW01_14455 and CSW01_14460 are separated by 165 nucleotides CSW01_14445: CSW01_14445 - MFS transporter, at 95,458 to 96,660 _14445 CSW01_14450: CSW01_14450 - hypothetical protein, at 96,761 to 97,141 _14450 CSW01_14455: CSW01_14455 - hypothetical protein, at 97,215 to 97,379 _14455 CSW01_14460: CSW01_14460 - dicarboxylate/amino acid:cation symporter, at 97,545 to 98,818 _14460 Position (kb) 96 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 95.784 kb on - strand, within CSW01_14445at 95.904 kb on + strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 96.017 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.143 kb on - strand, within CSW01_14445at 96.145 kb on + strand, within CSW01_14445at 96.217 kb on + strand, within CSW01_14445at 96.434 kb on + strand, within CSW01_14445at 96.455 kb on + strand, within CSW01_14445at 96.463 kb on - strand, within CSW01_14445at 96.463 kb on - strand, within CSW01_14445at 96.465 kb on + strand, within CSW01_14445at 96.511 kb on - strand, within CSW01_14445at 96.551 kb on - strandat 96.562 kb on + strandat 96.569 kb on + strandat 96.597 kb on - strandat 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.855 kb on + strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.863 kb on - strand, within CSW01_14450at 96.945 kb on - strand, within CSW01_14450at 96.986 kb on - strand, within CSW01_14450at 97.007 kb on + strand, within CSW01_14450at 97.198 kb on + strandat 97.250 kb on - strand, within CSW01_14455at 97.250 kb on - strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.275 kb on + strand, within CSW01_14455at 97.584 kb on - strandat 97.603 kb on + strandat 97.627 kb on - strandat 97.629 kb on + strandat 97.631 kb on + strandat 97.652 kb on - strandat 97.652 kb on - strandat 97.667 kb on + strandat 97.674 kb on + strand, within CSW01_14460at 97.675 kb on - strand, within CSW01_14460at 97.682 kb on - strand, within CSW01_14460at 97.682 kb on - strand, within CSW01_14460at 97.701 kb on + strand, within CSW01_14460at 97.730 kb on - strand, within CSW01_14460at 97.735 kb on + strand, within CSW01_14460at 97.820 kb on - strand, within CSW01_14460at 97.837 kb on - strand, within CSW01_14460at 97.894 kb on + strand, within CSW01_14460at 97.894 kb on + strand, within CSW01_14460at 97.902 kb on - strand, within CSW01_14460at 97.902 kb on - strand, within CSW01_14460at 98.059 kb on - strand, within CSW01_14460at 98.080 kb on + strand, within CSW01_14460at 98.088 kb on - strand, within CSW01_14460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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95,784 - CSW01_14445 0.27 -4.0
95,904 + CSW01_14445 0.37 +0.4
95,932 - CSW01_14445 0.39 -1.5
95,932 - CSW01_14445 0.39 +1.0
96,017 - CSW01_14445 0.46 +0.4
96,085 - CSW01_14445 0.52 -0.5
96,085 - CSW01_14445 0.52 -1.4
96,130 + CSW01_14445 0.56 -0.4
96,130 + CSW01_14445 0.56 +0.0
96,138 - CSW01_14445 0.57 -2.9
96,138 - CSW01_14445 0.57 -3.5
96,143 - CSW01_14445 0.57 -0.1
96,145 + CSW01_14445 0.57 +1.1
96,217 + CSW01_14445 0.63 -0.9
96,434 + CSW01_14445 0.81 +0.3
96,455 + CSW01_14445 0.83 +1.0
96,463 - CSW01_14445 0.84 +0.1
96,463 - CSW01_14445 0.84 +1.8
96,465 + CSW01_14445 0.84 +0.1
96,511 - CSW01_14445 0.88 -2.4
96,551 - -0.2
96,562 + +1.9
96,569 + -0.7
96,597 - -0.5
96,855 + CSW01_14450 0.25 +1.2
96,855 + CSW01_14450 0.25 -0.6
96,855 + CSW01_14450 0.25 -1.1
96,855 + CSW01_14450 0.25 -1.3
96,855 + CSW01_14450 0.25 +0.4
96,855 + CSW01_14450 0.25 -0.4
96,855 + CSW01_14450 0.25 -1.7
96,855 + CSW01_14450 0.25 +1.4
96,855 + CSW01_14450 0.25 -0.2
96,855 + CSW01_14450 0.25 -1.1
96,855 + CSW01_14450 0.25 -0.6
96,855 + CSW01_14450 0.25 -0.6
96,863 - CSW01_14450 0.27 -0.7
96,863 - CSW01_14450 0.27 +0.2
96,863 - CSW01_14450 0.27 -1.2
96,863 - CSW01_14450 0.27 +1.6
96,863 - CSW01_14450 0.27 +0.7
96,863 - CSW01_14450 0.27 -1.5
96,945 - CSW01_14450 0.48 -0.3
96,986 - CSW01_14450 0.59 -2.3
97,007 + CSW01_14450 0.65 -0.1
97,198 + +0.6
97,250 - CSW01_14455 0.21 +0.6
97,250 - CSW01_14455 0.21 +0.8
97,275 + CSW01_14455 0.36 +0.3
97,275 + CSW01_14455 0.36 -2.6
97,584 - -0.4
97,603 + -1.6
97,627 - -2.0
97,629 + +1.5
97,631 + -3.2
97,652 - -0.7
97,652 - +1.1
97,667 + -1.0
97,674 + CSW01_14460 0.10 -2.6
97,675 - CSW01_14460 0.10 +0.5
97,682 - CSW01_14460 0.11 +0.4
97,682 - CSW01_14460 0.11 +0.9
97,701 + CSW01_14460 0.12 -0.9
97,730 - CSW01_14460 0.15 -2.1
97,735 + CSW01_14460 0.15 -1.4
97,820 - CSW01_14460 0.22 -1.2
97,837 - CSW01_14460 0.23 -2.9
97,894 + CSW01_14460 0.27 +1.9
97,894 + CSW01_14460 0.27 +1.0
97,902 - CSW01_14460 0.28 -2.1
97,902 - CSW01_14460 0.28 -2.6
98,059 - CSW01_14460 0.40 -1.4
98,080 + CSW01_14460 0.42 +1.0
98,088 - CSW01_14460 0.43 -0.4

Or see this region's nucleotide sequence