Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14435

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14430 and CSW01_14435 are separated by 89 nucleotidesCSW01_14435 and CSW01_14440 are separated by 41 nucleotidesCSW01_14440 and CSW01_14445 are separated by 178 nucleotides CSW01_14430: CSW01_14430 - LysR family transcriptional regulator, at 92,603 to 93,490 _14430 CSW01_14435: CSW01_14435 - MFS transporter, at 93,580 to 94,791 _14435 CSW01_14440: CSW01_14440 - redox-sensitive transcriptional activator SoxR, at 94,833 to 95,279 _14440 CSW01_14445: CSW01_14445 - MFS transporter, at 95,458 to 96,660 _14445 Position (kb) 93 94 95Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 92.752 kb on + strand, within CSW01_14430at 92.752 kb on + strand, within CSW01_14430at 92.814 kb on + strand, within CSW01_14430at 92.840 kb on - strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.915 kb on + strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.932 kb on - strand, within CSW01_14430at 93.060 kb on - strand, within CSW01_14430at 93.081 kb on - strand, within CSW01_14430at 93.138 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.649 kb on + strandat 93.730 kb on - strand, within CSW01_14435at 93.797 kb on - strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.858 kb on - strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.929 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.992 kb on - strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.109 kb on - strand, within CSW01_14435at 94.168 kb on - strand, within CSW01_14435at 94.192 kb on + strand, within CSW01_14435at 94.200 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.325 kb on - strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.436 kb on - strand, within CSW01_14435at 94.521 kb on + strand, within CSW01_14435at 94.544 kb on - strand, within CSW01_14435at 94.665 kb on + strand, within CSW01_14435at 94.764 kb on + strandat 94.764 kb on + strandat 94.766 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.819 kb on + strandat 94.821 kb on + strandat 94.923 kb on - strand, within CSW01_14440at 95.122 kb on + strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.132 kb on + strand, within CSW01_14440at 95.155 kb on - strand, within CSW01_14440at 95.227 kb on + strand, within CSW01_14440at 95.240 kb on + strandat 95.348 kb on + strandat 95.549 kb on - strandat 95.621 kb on + strand, within CSW01_14445at 95.703 kb on + strand, within CSW01_14445at 95.711 kb on - strand, within CSW01_14445at 95.738 kb on - strand, within CSW01_14445at 95.743 kb on + strand, within CSW01_14445at 95.751 kb on - strand, within CSW01_14445at 95.784 kb on - strand, within CSW01_14445

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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92,752 + CSW01_14430 0.17 -0.3
92,752 + CSW01_14430 0.17 -1.8
92,814 + CSW01_14430 0.24 +0.9
92,840 - CSW01_14430 0.27 +0.5
92,910 + CSW01_14430 0.35 -0.1
92,910 + CSW01_14430 0.35 +0.2
92,910 + CSW01_14430 0.35 +0.2
92,915 + CSW01_14430 0.35 +0.1
92,923 - CSW01_14430 0.36 -0.7
92,923 - CSW01_14430 0.36 +0.2
92,932 - CSW01_14430 0.37 -2.0
93,060 - CSW01_14430 0.51 -1.4
93,081 - CSW01_14430 0.54 +0.2
93,138 - CSW01_14430 0.60 -3.3
93,217 - CSW01_14430 0.69 -1.8
93,217 - CSW01_14430 0.69 -0.1
93,217 - CSW01_14430 0.69 +0.0
93,649 + +0.1
93,730 - CSW01_14435 0.12 -1.0
93,797 - CSW01_14435 0.18 -3.8
93,848 + CSW01_14435 0.22 +0.7
93,848 + CSW01_14435 0.22 -0.1
93,848 + CSW01_14435 0.22 +1.0
93,848 + CSW01_14435 0.22 +0.6
93,848 + CSW01_14435 0.22 +0.7
93,848 + CSW01_14435 0.22 -2.1
93,848 + CSW01_14435 0.22 +2.1
93,856 - CSW01_14435 0.23 +0.3
93,856 - CSW01_14435 0.23 -2.1
93,856 - CSW01_14435 0.23 +0.6
93,858 - CSW01_14435 0.23 +1.1
93,914 + CSW01_14435 0.28 -1.2
93,914 + CSW01_14435 0.28 +0.1
93,914 + CSW01_14435 0.28 +1.5
93,914 + CSW01_14435 0.28 +0.9
93,914 + CSW01_14435 0.28 -1.2
93,914 + CSW01_14435 0.28 +0.3
93,922 - CSW01_14435 0.28 +3.3
93,922 - CSW01_14435 0.28 -1.5
93,922 - CSW01_14435 0.28 +1.6
93,922 - CSW01_14435 0.28 +1.8
93,922 - CSW01_14435 0.28 -2.1
93,929 + CSW01_14435 0.29 -0.6
93,974 + CSW01_14435 0.33 +2.6
93,974 + CSW01_14435 0.33 -1.4
93,992 - CSW01_14435 0.34 +0.9
94,101 + CSW01_14435 0.43 +2.3
94,101 + CSW01_14435 0.43 +1.4
94,101 + CSW01_14435 0.43 -1.6
94,109 - CSW01_14435 0.44 +0.4
94,168 - CSW01_14435 0.49 +0.5
94,192 + CSW01_14435 0.50 +0.5
94,200 - CSW01_14435 0.51 -0.1
94,210 - CSW01_14435 0.52 +0.2
94,210 - CSW01_14435 0.52 -3.2
94,325 - CSW01_14435 0.61 +1.4
94,395 + CSW01_14435 0.67 -0.3
94,395 + CSW01_14435 0.67 +0.7
94,436 - CSW01_14435 0.71 +0.1
94,521 + CSW01_14435 0.78 +2.0
94,544 - CSW01_14435 0.80 -0.6
94,665 + CSW01_14435 0.90 -0.6
94,764 + -1.5
94,764 + -0.9
94,766 - +1.8
94,772 - -0.3
94,772 - +0.1
94,772 - -3.2
94,819 + +0.5
94,821 + -0.9
94,923 - CSW01_14440 0.20 -1.6
95,122 + CSW01_14440 0.65 +0.8
95,130 - CSW01_14440 0.66 +0.9
95,130 - CSW01_14440 0.66 +2.1
95,130 - CSW01_14440 0.66 +1.0
95,130 - CSW01_14440 0.66 +1.4
95,130 - CSW01_14440 0.66 -3.6
95,130 - CSW01_14440 0.66 +0.7
95,132 + CSW01_14440 0.67 +0.1
95,155 - CSW01_14440 0.72 +1.3
95,227 + CSW01_14440 0.88 +0.0
95,240 + -2.3
95,348 + +0.5
95,549 - +1.5
95,621 + CSW01_14445 0.14 +0.0
95,703 + CSW01_14445 0.20 +0.5
95,711 - CSW01_14445 0.21 +1.1
95,738 - CSW01_14445 0.23 -0.6
95,743 + CSW01_14445 0.24 -1.9
95,751 - CSW01_14445 0.24 +0.8
95,784 - CSW01_14445 0.27 -4.0

Or see this region's nucleotide sequence