Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13810

Experiment: ICP3_phage_4.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep1
2,940,483	-		CSW01_13805	0.31	-3.0
2,940,603	-		CSW01_13805	0.44	-2.1
2,940,603	-		CSW01_13805	0.44	-1.7
2,940,625	+		CSW01_13805	0.47	-0.2
2,940,633	-		CSW01_13805	0.47	-1.5
2,940,633	-		CSW01_13805	0.47	-2.5
2,940,676	-		CSW01_13805	0.52	-0.1
2,940,676	-		CSW01_13805	0.52	-2.6
2,940,690	+		CSW01_13805	0.54	-1.9
2,940,817	-		CSW01_13805	0.68	-2.2
2,940,881	+		CSW01_13805	0.75	-0.9
2,940,881	+		CSW01_13805	0.75	+1.6
2,940,881	-		CSW01_13805	0.75	-2.4
2,940,894	-		CSW01_13805	0.77	-1.2
2,940,927	-		CSW01_13805	0.80	+0.3
2,940,929	-		CSW01_13805	0.81	-2.2
2,941,092	-				-1.4
2,941,121	+				-0.5
2,941,354	-				-0.8
2,941,434	+				-2.8
2,941,454	+				-3.2
2,941,462	-				-1.9
2,941,462	-				-2.1
2,941,462	-				-2.4
2,941,462	-				+0.1
2,941,509	-				-1.9
2,941,569	+				-2.5
2,941,570	+				-4.6
2,941,696	-		CSW01_13810	0.16	-2.2
2,941,740	+		CSW01_13810	0.19	-0.9
2,941,748	-		CSW01_13810	0.19	-2.9
2,941,752	-		CSW01_13810	0.19	+1.8
2,941,760	-		CSW01_13810	0.20	-1.8
2,941,808	+		CSW01_13810	0.23	+2.5
2,941,808	+		CSW01_13810	0.23	-2.6
2,941,808	+		CSW01_13810	0.23	-1.8
2,941,925	+		CSW01_13810	0.30	-1.3
2,941,925	+		CSW01_13810	0.30	-2.1
2,941,989	+		CSW01_13810	0.34	-2.5
2,941,997	-		CSW01_13810	0.34	-1.8
2,942,013	+		CSW01_13810	0.35	-1.1
2,942,015	+		CSW01_13810	0.35	-1.0
2,942,060	-		CSW01_13810	0.38	-3.6
2,942,101	+		CSW01_13810	0.41	-2.4
2,942,130	+		CSW01_13810	0.43	-3.2
2,942,138	-		CSW01_13810	0.43	-3.0
2,942,196	+		CSW01_13810	0.47	+0.1
2,942,227	-		CSW01_13810	0.48	+0.7
2,942,243	+		CSW01_13810	0.49	-4.5
2,942,260	-		CSW01_13810	0.51	-3.9
2,942,278	+		CSW01_13810	0.52	-2.1
2,942,288	+		CSW01_13810	0.52	-4.9
2,942,305	+		CSW01_13810	0.53	+1.5
2,942,338	+		CSW01_13810	0.55	-0.6
2,942,362	-		CSW01_13810	0.57	-3.1
2,942,389	+		CSW01_13810	0.58	-0.4
2,942,389	-		CSW01_13810	0.58	-2.1
2,942,390	-		CSW01_13810	0.59	-3.1
2,942,617	+		CSW01_13810	0.72	-2.0
2,942,643	+		CSW01_13810	0.74	-3.1
2,942,643	+		CSW01_13810	0.74	-1.4
2,942,651	-		CSW01_13810	0.75	+2.8
2,942,651	-		CSW01_13810	0.75	-2.4
2,942,681	-		CSW01_13810	0.76	-2.5
2,942,687	+		CSW01_13810	0.77	-1.8
2,942,701	+		CSW01_13810	0.78	-4.1
2,942,720	+		CSW01_13810	0.79	-3.5
2,942,753	+		CSW01_13810	0.81	+0.6
2,942,753	+		CSW01_13810	0.81	-2.3
2,942,753	+		CSW01_13810	0.81	-2.4
2,942,761	-		CSW01_13810	0.81	-2.1
2,942,761	-		CSW01_13810	0.81	-1.8
2,942,761	-		CSW01_13810	0.81	-3.0
2,942,761	-		CSW01_13810	0.81	-1.2
2,942,761	-		CSW01_13810	0.81	-3.6
2,942,763	+		CSW01_13810	0.81	-1.9
2,942,791	-		CSW01_13810	0.83	-2.4
2,942,887	+		CSW01_13810	0.89	-1.8
2,942,895	-		CSW01_13810	0.90	-1.5
2,942,925	-				-3.5
2,942,991	+				+0.8
2,943,091	-				+0.7
2,943,135	+				+1.1
2,943,194	+				-1.3
2,943,274	+				-0.8
2,943,357	-				-0.5
2,943,366	+				+0.3
2,943,374	-				-3.6
2,943,380	+				+0.5
2,943,420	-				+0.6
2,943,421	+				-2.6
2,943,429	-				-2.3
2,943,561	-		CSW01_13815	0.16	+1.5
2,943,603	+		CSW01_13815	0.19	-0.0
2,943,631	-		CSW01_13815	0.20	+0.8
2,943,649	+		CSW01_13815	0.21	+0.1
2,943,649	+		CSW01_13815	0.21	-1.7
2,943,657	-		CSW01_13815	0.21	-1.0
2,943,700	+		CSW01_13815	0.24	-0.3
2,943,708	-		CSW01_13815	0.24	+1.4
2,943,708	-		CSW01_13815	0.24	-0.8
2,943,719	-		CSW01_13815	0.25	+1.3
2,943,776	-		CSW01_13815	0.28	+0.3
2,943,788	-		CSW01_13815	0.28	+2.1
2,943,804	+		CSW01_13815	0.29	-1.4
2,943,804	+		CSW01_13815	0.29	-1.0
2,943,804	+		CSW01_13815	0.29	+2.4
2,943,804	+		CSW01_13815	0.29	+0.3
2,943,804	+		CSW01_13815	0.29	-2.9
2,943,804	+		CSW01_13815	0.29	-0.9
2,943,804	+		CSW01_13815	0.29	+0.7
2,943,804	+		CSW01_13815	0.29	-3.4
2,943,804	+		CSW01_13815	0.29	+0.5
2,943,804	+		CSW01_13815	0.29	+0.4
2,943,804	+		CSW01_13815	0.29	-0.4
2,943,804	+		CSW01_13815	0.29	-0.2
2,943,804	+		CSW01_13815	0.29	+0.6
2,943,804	+		CSW01_13815	0.29	-0.4
2,943,804	+		CSW01_13815	0.29	+1.6
2,943,809	+		CSW01_13815	0.30	-0.4
2,943,812	-		CSW01_13815	0.30	-1.3
2,943,812	-		CSW01_13815	0.30	+1.2
2,943,812	-		CSW01_13815	0.30	+0.8
2,943,812	-		CSW01_13815	0.30	-1.3
2,943,812	-		CSW01_13815	0.30	+0.4
2,943,812	-		CSW01_13815	0.30	+2.2
2,943,812	-		CSW01_13815	0.30	+0.2
2,943,812	-		CSW01_13815	0.30	-2.9
2,943,812	-		CSW01_13815	0.30	+0.3
2,943,812	-		CSW01_13815	0.30	+1.8
2,943,812	-		CSW01_13815	0.30	+1.0
2,943,817	-		CSW01_13815	0.30	-0.1
2,943,819	+		CSW01_13815	0.30	+0.8
2,943,827	-		CSW01_13815	0.30	-2.3
2,943,827	-		CSW01_13815	0.30	+1.2
2,943,867	+		CSW01_13815	0.33	+0.9
2,943,879	+		CSW01_13815	0.33	-0.3
2,943,879	+		CSW01_13815	0.33	+0.7
2,943,879	+		CSW01_13815	0.33	+1.2
2,943,879	+		CSW01_13815	0.33	-0.7
2,943,904	-		CSW01_13815	0.35	-1.7
2,943,923	+		CSW01_13815	0.36	-2.1
2,943,964	+		CSW01_13815	0.38	-0.4
2,943,964	+		CSW01_13815	0.38	-3.8
2,943,976	+		CSW01_13815	0.38	-1.6
2,943,976	+		CSW01_13815	0.38	-3.0
2,943,976	+		CSW01_13815	0.38	+0.7
2,943,984	-		CSW01_13815	0.39	+0.5
2,943,984	-		CSW01_13815	0.39	-0.4
2,943,984	-		CSW01_13815	0.39	-1.8
2,943,986	+		CSW01_13815	0.39	+0.6
2,943,994	+		CSW01_13815	0.39	+0.5
2,943,994	+		CSW01_13815	0.39	-1.1
2,943,994	+		CSW01_13815	0.39	+1.2
2,943,994	+		CSW01_13815	0.39	-3.4
2,943,994	+		CSW01_13815	0.39	+1.1
2,943,994	+		CSW01_13815	0.39	+1.0
2,944,002	-		CSW01_13815	0.40	+0.2
2,944,002	-		CSW01_13815	0.40	-0.1
2,944,002	-		CSW01_13815	0.40	+0.2
2,944,002	-		CSW01_13815	0.40	-0.4
2,944,002	-		CSW01_13815	0.40	-2.4
2,944,002	-		CSW01_13815	0.40	-0.7
2,944,007	-		CSW01_13815	0.40	+0.7
2,944,033	-		CSW01_13815	0.41	-1.5
2,944,040	+		CSW01_13815	0.42	+0.3