Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13705

Experiment: ICP3_phage_4.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep1
2,920,493	-		CSW01_13695	0.86	-1.8
2,920,504	+		CSW01_13695	0.87	-0.7
2,920,516	+		CSW01_13695	0.89	-3.1
2,920,524	+				+1.9
2,920,530	+				+1.1
2,920,530	+				+1.6
2,920,530	+				+0.2
2,920,530	+				+1.2
2,920,617	+				-0.9
2,920,625	+				+0.5
2,920,627	-				+1.4
2,920,627	-				+1.6
2,920,784	-		CSW01_13700	0.11	-0.2
2,920,793	-		CSW01_13700	0.13	-2.1
2,920,793	-		CSW01_13700	0.13	+0.6
2,920,809	+		CSW01_13700	0.16	+0.0
2,920,888	+		CSW01_13700	0.32	-0.3
2,920,888	-		CSW01_13700	0.32	+0.6
2,920,898	-		CSW01_13700	0.34	+1.2
2,921,037	-		CSW01_13700	0.63	-0.4
2,921,061	-		CSW01_13700	0.68	+1.4
2,921,071	+		CSW01_13700	0.70	+0.4
2,921,071	+		CSW01_13700	0.70	+0.1
2,921,079	-		CSW01_13700	0.71	-2.7
2,921,079	-		CSW01_13700	0.71	-0.6
2,921,079	-		CSW01_13700	0.71	+1.1
2,921,117	-		CSW01_13700	0.79	+1.1
2,921,171	+				+1.1
2,921,190	-				-0.3
2,921,190	-				+0.4
2,921,213	-				-2.0
2,921,233	+				-0.6
2,921,268	+				+1.0
2,921,268	+				+0.9
2,921,290	-				+2.3
2,921,290	-				-2.9
2,921,365	+				+1.2
2,921,366	-				+1.8
2,921,366	-				+0.9
2,921,366	-				-1.1
2,921,370	+				+0.3
2,921,378	+				-3.0
2,921,378	+				+0.9
2,921,378	-				+0.6
2,921,386	-				-0.2
2,921,386	-				+1.6
2,921,410	+				+1.4
2,921,490	+				+0.1
2,921,518	+				-0.7
2,921,521	-				+0.4
2,921,602	+				+1.3
2,921,606	-				-1.3
2,921,607	+				+0.8
2,921,607	+				+0.5
2,921,607	+				-2.7
2,921,615	-				-1.8
2,921,615	-				+2.0
2,921,660	-				-0.7
2,921,674	-				-3.2
2,921,709	+		CSW01_13705	0.11	-0.8
2,921,832	-		CSW01_13705	0.16	-3.3
2,921,857	+		CSW01_13705	0.17	-0.2
2,921,857	+		CSW01_13705	0.17	+0.9
2,921,857	+		CSW01_13705	0.17	-1.8
2,921,857	+		CSW01_13705	0.17	+1.0
2,921,857	+		CSW01_13705	0.17	-3.4
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	-4.1
2,921,857	+		CSW01_13705	0.17	+0.5
2,921,857	+		CSW01_13705	0.17	+1.1
2,921,857	+		CSW01_13705	0.17	-3.5
2,921,857	+		CSW01_13705	0.17	-2.1
2,921,857	+		CSW01_13705	0.17	+1.0
2,921,857	+		CSW01_13705	0.17	+1.2
2,921,857	+		CSW01_13705	0.17	+0.4
2,921,857	+		CSW01_13705	0.17	+0.8
2,921,857	+		CSW01_13705	0.17	+0.1
2,921,857	+		CSW01_13705	0.17	-3.1
2,921,857	+		CSW01_13705	0.17	-1.7
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	-2.6
2,921,857	+		CSW01_13705	0.17	-0.7
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	+1.6
2,921,857	+		CSW01_13705	0.17	-1.7
2,921,857	+		CSW01_13705	0.17	-0.2
2,921,857	+		CSW01_13705	0.17	-2.7
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	+0.9
2,921,857	+		CSW01_13705	0.17	+0.2
2,921,857	+		CSW01_13705	0.17	-2.6
2,921,857	+		CSW01_13705	0.17	-0.1
2,921,857	+		CSW01_13705	0.17	-0.7
2,921,857	+		CSW01_13705	0.17	-0.7
2,921,857	+		CSW01_13705	0.17	-0.9
2,921,857	+		CSW01_13705	0.17	+2.0
2,921,857	+		CSW01_13705	0.17	-0.7
2,921,857	+		CSW01_13705	0.17	-0.8
2,921,857	+		CSW01_13705	0.17	+0.4
2,921,857	+		CSW01_13705	0.17	+0.7
2,921,857	+		CSW01_13705	0.17	+0.8
2,921,865	-		CSW01_13705	0.17	+0.7
2,921,865	-		CSW01_13705	0.17	-0.4
2,921,865	-		CSW01_13705	0.17	-0.2
2,921,865	-		CSW01_13705	0.17	-0.9
2,921,865	-		CSW01_13705	0.17	+0.8
2,921,865	-		CSW01_13705	0.17	-0.9
2,921,865	-		CSW01_13705	0.17	-0.2
2,921,865	-		CSW01_13705	0.17	-1.9
2,921,865	-		CSW01_13705	0.17	+0.4
2,921,865	-		CSW01_13705	0.17	-2.3
2,921,865	-		CSW01_13705	0.17	-0.0
2,921,865	-		CSW01_13705	0.17	-4.6
2,921,865	-		CSW01_13705	0.17	+0.8
2,921,865	-		CSW01_13705	0.17	+0.6
2,921,865	-		CSW01_13705	0.17	-2.5
2,921,865	-		CSW01_13705	0.17	-2.9
2,921,865	-		CSW01_13705	0.17	-0.9
2,921,865	-		CSW01_13705	0.17	+0.6
2,921,865	-		CSW01_13705	0.17	-4.1
2,921,865	-		CSW01_13705	0.17	+2.5
2,921,865	-		CSW01_13705	0.17	-2.9
2,921,865	-		CSW01_13705	0.17	-0.9
2,921,865	-		CSW01_13705	0.17	-3.8
2,921,865	-		CSW01_13705	0.17	-1.2
2,921,865	-		CSW01_13705	0.17	+0.4
2,921,865	-		CSW01_13705	0.17	+2.2
2,921,865	-		CSW01_13705	0.17	-0.5
2,921,865	-		CSW01_13705	0.17	-0.3
2,921,865	-		CSW01_13705	0.17	+0.2
2,921,865	-		CSW01_13705	0.17	-1.2
2,921,865	-		CSW01_13705	0.17	-0.1
2,921,865	-		CSW01_13705	0.17	-0.1
2,921,865	-		CSW01_13705	0.17	-1.2
2,921,865	-		CSW01_13705	0.17	-0.1
2,921,865	-		CSW01_13705	0.17	-0.3
2,921,893	+		CSW01_13705	0.19	-3.1
2,921,920	+		CSW01_13705	0.20	-1.7
2,921,948	-		CSW01_13705	0.21	-2.6
2,921,975	+		CSW01_13705	0.22	+1.1
2,922,047	+		CSW01_13705	0.25	+0.6
2,922,053	+		CSW01_13705	0.25	-0.9
2,922,081	+		CSW01_13705	0.27	-3.0
2,922,081	+		CSW01_13705	0.27	-3.7
2,922,159	+		CSW01_13705	0.30	-3.5
2,922,165	+		CSW01_13705	0.30	-0.2
2,922,167	-		CSW01_13705	0.30	-2.8
2,922,214	-		CSW01_13705	0.32	-2.4
2,922,238	+		CSW01_13705	0.33	-0.8
2,922,246	-		CSW01_13705	0.34	+1.4
2,922,251	+		CSW01_13705	0.34	-2.5
2,922,251	+		CSW01_13705	0.34	+0.8
2,922,259	-		CSW01_13705	0.34	+1.1
2,922,298	-		CSW01_13705	0.36	+1.2
2,922,328	+		CSW01_13705	0.37	-3.4
2,922,351	+		CSW01_13705	0.38	-1.7
2,922,361	-		CSW01_13705	0.39	-0.3
2,922,451	-		CSW01_13705	0.43	-3.2
2,922,456	+		CSW01_13705	0.43	+1.6
2,922,571	+		CSW01_13705	0.48	-3.2
2,922,571	+		CSW01_13705	0.48	+0.4
2,922,571	+		CSW01_13705	0.48	+0.9
2,922,573	+		CSW01_13705	0.48	-3.3
2,922,573	+		CSW01_13705	0.48	+1.1
2,922,579	-		CSW01_13705	0.48	-0.1
2,922,579	-		CSW01_13705	0.48	-0.4
2,922,581	-		CSW01_13705	0.48	-0.7
2,922,603	-		CSW01_13705	0.49	-1.2
2,922,633	-		CSW01_13705	0.50	+1.3
2,922,633	-		CSW01_13705	0.50	+0.2
2,922,724	+		CSW01_13705	0.54	-2.8
2,922,771	+		CSW01_13705	0.56	-3.3
2,922,779	-		CSW01_13705	0.57	+1.0
2,922,779	-		CSW01_13705	0.57	+0.6
2,922,852	+		CSW01_13705	0.60	-1.8
2,922,858	+		CSW01_13705	0.60	+2.7
2,922,866	-		CSW01_13705	0.60	+0.6
2,922,866	-		CSW01_13705	0.60	-2.8
2,922,866	-		CSW01_13705	0.60	-2.5
2,922,866	-		CSW01_13705	0.60	+1.2
2,922,866	-		CSW01_13705	0.60	-1.9
2,922,877	-		CSW01_13705	0.61	+1.3
2,922,885	+		CSW01_13705	0.61	-2.4
2,922,885	+		CSW01_13705	0.61	+0.9
2,922,885	+		CSW01_13705	0.61	-0.1
2,922,885	+		CSW01_13705	0.61	-3.4
2,922,885	+		CSW01_13705	0.61	-2.8
2,922,906	+		CSW01_13705	0.62	-2.6
2,922,914	-		CSW01_13705	0.63	-1.0
2,922,918	+		CSW01_13705	0.63	-0.4
2,922,920	+		CSW01_13705	0.63	-3.3
2,922,920	+		CSW01_13705	0.63	-0.1
2,922,920	+		CSW01_13705	0.63	+0.3
2,922,920	+		CSW01_13705	0.63	+0.5
2,922,920	+		CSW01_13705	0.63	+1.0
2,922,928	-		CSW01_13705	0.63	+1.1
2,922,928	-		CSW01_13705	0.63	+1.2
2,922,928	-		CSW01_13705	0.63	-3.2
2,922,928	-		CSW01_13705	0.63	-2.2
2,922,928	-		CSW01_13705	0.63	-3.5
2,922,938	-		CSW01_13705	0.64	+1.6
2,922,945	-		CSW01_13705	0.64	+1.5
2,922,947	-		CSW01_13705	0.64	-1.7
2,922,950	+		CSW01_13705	0.64	-0.8
2,922,974	+		CSW01_13705	0.65	+1.5
2,923,065	-		CSW01_13705	0.69	+1.8
2,923,065	-		CSW01_13705	0.69	-1.5
2,923,089	+		CSW01_13705	0.70	-0.5
2,923,134	-		CSW01_13705	0.72	+0.1
2,923,210	+		CSW01_13705	0.75	+0.7
2,923,210	-		CSW01_13705	0.75	-3.3
2,923,257	+		CSW01_13705	0.77	-2.7
2,923,257	+		CSW01_13705	0.77	+1.3
2,923,265	-		CSW01_13705	0.78	-0.2
2,923,265	-		CSW01_13705	0.78	+3.3
2,923,270	+		CSW01_13705	0.78	+0.4
2,923,270	+		CSW01_13705	0.78	+0.0
2,923,270	+		CSW01_13705	0.78	-0.7
2,923,278	-		CSW01_13705	0.78	-0.5
2,923,292	+		CSW01_13705	0.79	-0.9
2,923,300	-		CSW01_13705	0.79	-1.4
2,923,327	+		CSW01_13705	0.80	-2.3
2,923,327	+		CSW01_13705	0.80	-1.2
2,923,335	-		CSW01_13705	0.81	-0.1
2,923,335	-		CSW01_13705	0.81	+0.8
2,923,394	-		CSW01_13705	0.83	-2.7
2,923,394	-		CSW01_13705	0.83	-2.2
2,923,420	+		CSW01_13705	0.84	+0.7
2,923,426	-		CSW01_13705	0.85	-4.3
2,923,426	-		CSW01_13705	0.85	+0.1
2,923,428	-		CSW01_13705	0.85	+0.8
2,923,457	-		CSW01_13705	0.86	-1.8
2,923,478	+		CSW01_13705	0.87	-1.5
2,923,493	+		CSW01_13705	0.87	+1.0
2,923,524	+		CSW01_13705	0.89	-0.7
2,923,543	+		CSW01_13705	0.90	-3.2
2,923,543	+		CSW01_13705	0.90	+0.7
2,923,543	+		CSW01_13705	0.90	-0.8
2,923,543	+		CSW01_13705	0.90	-1.1
2,923,543	+		CSW01_13705	0.90	+0.6
2,923,544	+		CSW01_13705	0.90	+1.8
2,923,551	-				+0.8
2,923,551	-				-0.2
2,923,551	-				-2.9
2,923,551	-				-3.9
2,923,551	-				-1.7
2,923,556	-				+0.3
2,923,594	+				-0.1
2,923,618	-				-2.1
2,923,620	+				+1.3
2,923,657	+				+1.2
2,923,665	-				-1.3
2,923,665	-				-1.5
2,923,665	-				+1.0
2,923,667	+				-0.4
2,923,667	+				+1.0
2,923,670	-				+1.5
2,923,679	+				-4.2
2,923,679	+				-2.4
2,923,679	+				-0.2
2,923,679	+				-0.3
2,923,679	+				+0.8
2,923,679	+				-1.2
2,923,679	+				+0.2
2,923,687	-				+2.5
2,923,687	-				-4.4
2,923,687	-				-0.7
2,923,687	-				-2.5
2,923,687	-				+0.6
2,923,712	+				-3.7
2,923,719	+				+1.0
2,923,727	-				+0.4
2,923,732	-				-0.7
2,923,737	-				-0.3
2,923,744	-				-2.4
2,923,744	-				-2.2
2,923,760	+				+0.6
2,923,812	+				-4.5
2,923,813	-				+1.6
2,923,820	-				-1.9
2,923,820	-				+1.0
2,923,820	-				+1.0
2,923,849	-				-0.2
2,923,864	+				-0.2
2,923,864	+				-4.7
2,923,900	-				+0.5
2,923,903	+				-1.4
2,923,943	+		CSW01_13710	0.14	-1.0
2,923,992	+		CSW01_13710	0.23	+0.6
2,923,992	+		CSW01_13710	0.23	-0.1
2,924,000	-		CSW01_13710	0.25	+0.3
2,924,024	-		CSW01_13710	0.30	-1.2
2,924,025	-		CSW01_13710	0.30	+0.6
2,924,025	-		CSW01_13710	0.30	-1.7
2,924,028	+		CSW01_13710	0.31	-1.4
2,924,031	-		CSW01_13710	0.31	-1.2
2,924,031	-		CSW01_13710	0.31	-0.0
2,924,031	-		CSW01_13710	0.31	+1.2
2,924,033	+		CSW01_13710	0.32	-0.2
2,924,036	-		CSW01_13710	0.32	-3.6
2,924,041	-		CSW01_13710	0.33	-2.2
2,924,041	-		CSW01_13710	0.33	-5.1
2,924,063	+		CSW01_13710	0.38	-0.7
2,924,094	-		CSW01_13710	0.44	+0.9
2,924,102	+		CSW01_13710	0.46	-1.7
2,924,109	+		CSW01_13710	0.47	-3.4
2,924,140	+		CSW01_13710	0.53	-1.9
2,924,228	+		CSW01_13710	0.71	+1.8
2,924,228	+		CSW01_13710	0.71	+0.6
2,924,236	-		CSW01_13710	0.72	-2.4
2,924,236	-		CSW01_13710	0.72	-4.5
2,924,236	-		CSW01_13710	0.72	-0.1
2,924,236	-		CSW01_13710	0.72	+1.4
2,924,236	-		CSW01_13710	0.72	+0.4
2,924,236	-		CSW01_13710	0.72	+0.3
2,924,297	+		CSW01_13710	0.85	-0.9
2,924,337	+				+1.2
2,924,341	+				-2.2
2,924,345	-				+0.8
2,924,347	+				-2.6
2,924,347	+				-2.1
2,924,347	+				-1.3
2,924,347	+				-1.2
2,924,347	+				-3.4
2,924,362	+				+0.8
2,924,385	+				+0.7
2,924,460	-				+0.2
2,924,485	+				+1.0
2,924,485	+				+0.8
2,924,493	-				-3.0
2,924,530	-				+0.7
2,924,645	+		CSW01_13715	0.17	+0.3
2,924,653	-		CSW01_13715	0.18	-3.1
2,924,672	-		CSW01_13715	0.20	-0.5
2,924,718	+		CSW01_13715	0.26	+1.5
2,924,732	+		CSW01_13715	0.28	-3.0
2,924,769	+		CSW01_13715	0.32	+2.0
2,924,782	-		CSW01_13715	0.34	-0.9