Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13390

Experiment: ICP3_phage_4.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep1
2,849,029	-		CSW01_13385	0.39	+0.8
2,849,034	-		CSW01_13385	0.39	+1.9
2,849,071	-		CSW01_13385	0.42	+0.6
2,849,092	+		CSW01_13385	0.44	-1.7
2,849,100	-		CSW01_13385	0.45	+0.1
2,849,105	-		CSW01_13385	0.45	-3.3
2,849,112	+		CSW01_13385	0.46	+1.5
2,849,120	-		CSW01_13385	0.47	-1.2
2,849,120	-		CSW01_13385	0.47	-0.8
2,849,182	+		CSW01_13385	0.52	+0.5
2,849,190	-		CSW01_13385	0.53	-0.7
2,849,190	-		CSW01_13385	0.53	+3.3
2,849,284	+		CSW01_13385	0.61	-0.2
2,849,289	+		CSW01_13385	0.61	-0.2
2,849,296	+		CSW01_13385	0.62	-2.7
2,849,326	-		CSW01_13385	0.65	-0.1
2,849,341	-		CSW01_13385	0.66	+1.3
2,849,354	+		CSW01_13385	0.67	-1.4
2,849,381	-		CSW01_13385	0.70	+1.1
2,849,381	-		CSW01_13385	0.70	-1.8
2,849,394	+		CSW01_13385	0.71	-2.4
2,849,429	-		CSW01_13385	0.74	-0.8
2,849,441	-		CSW01_13385	0.75	-0.7
2,849,507	-		CSW01_13385	0.81	-1.9
2,849,524	+		CSW01_13385	0.82	+1.1
2,849,557	+		CSW01_13385	0.85	+1.1
2,849,559	+		CSW01_13385	0.85	+1.5
2,849,565	-		CSW01_13385	0.86	-1.9
2,849,565	-		CSW01_13385	0.86	-0.0
2,849,605	+		CSW01_13385	0.89	-2.7
2,849,613	-				+1.4
2,849,617	+				-0.5
2,849,704	-				-1.2
2,849,704	-				+0.4
2,849,973	+				+1.6
2,849,974	-				+0.2
2,850,078	+				-2.4
2,850,133	+				-3.1
2,850,193	+				-3.5
2,850,193	+				+0.1
2,850,193	+				+0.2
2,850,193	+				-0.7
2,850,193	+				-0.9
2,850,201	-		CSW01_13390	0.10	+1.4
2,850,201	-		CSW01_13390	0.10	+0.3
2,850,201	-		CSW01_13390	0.10	-0.1
2,850,201	-		CSW01_13390	0.10	+0.9
2,850,216	+		CSW01_13390	0.11	-2.7
2,850,299	+		CSW01_13390	0.14	-0.0
2,850,331	+		CSW01_13390	0.15	+1.3
2,850,339	-		CSW01_13390	0.15	-1.3
2,850,339	-		CSW01_13390	0.15	+0.5
2,850,339	-		CSW01_13390	0.15	+0.4
2,850,406	+		CSW01_13390	0.18	+0.2
2,850,411	+		CSW01_13390	0.18	+0.6
2,850,419	-		CSW01_13390	0.18	+0.3
2,850,421	+		CSW01_13390	0.19	+0.3
2,850,430	+		CSW01_13390	0.19	+0.5
2,850,432	+		CSW01_13390	0.19	+0.9
2,850,432	+		CSW01_13390	0.19	-0.7
2,850,440	-		CSW01_13390	0.19	+2.5
2,850,440	-		CSW01_13390	0.19	+0.4
2,850,440	-		CSW01_13390	0.19	-2.2
2,850,445	+		CSW01_13390	0.19	-1.3
2,850,445	+		CSW01_13390	0.19	+0.6
2,850,453	-		CSW01_13390	0.20	-0.0
2,850,453	-		CSW01_13390	0.20	+1.1
2,850,453	-		CSW01_13390	0.20	-1.1
2,850,573	+		CSW01_13390	0.24	+0.4
2,850,589	+		CSW01_13390	0.25	+1.1
2,850,603	+		CSW01_13390	0.25	+0.9
2,850,613	+		CSW01_13390	0.26	+0.4
2,850,621	-		CSW01_13390	0.26	+1.3
2,850,637	-		CSW01_13390	0.27	-1.9
2,850,695	+		CSW01_13390	0.29	+1.1
2,850,695	+		CSW01_13390	0.29	-0.6
2,850,701	-		CSW01_13390	0.29	+0.6
2,850,702	-		CSW01_13390	0.29	-3.6
2,850,748	+		CSW01_13390	0.31	-4.2
2,850,780	+		CSW01_13390	0.32	+1.0
2,850,841	-		CSW01_13390	0.35	+1.2
2,850,858	-		CSW01_13390	0.35	+1.0
2,850,871	+		CSW01_13390	0.36	-1.9
2,850,879	-		CSW01_13390	0.36	-0.8
2,850,879	-		CSW01_13390	0.36	-0.9
2,850,879	-		CSW01_13390	0.36	+0.6
2,850,879	-		CSW01_13390	0.36	+1.0
2,850,974	-		CSW01_13390	0.40	-0.5
2,850,979	-		CSW01_13390	0.40	-0.4
2,851,018	-		CSW01_13390	0.41	+1.7
2,851,059	-		CSW01_13390	0.43	+0.7
2,851,076	-		CSW01_13390	0.43	-3.6
2,851,076	-		CSW01_13390	0.43	+0.3
2,851,077	+		CSW01_13390	0.43	-3.7
2,851,109	+		CSW01_13390	0.45	+1.8
2,851,136	-		CSW01_13390	0.46	-0.4
2,851,136	-		CSW01_13390	0.46	-2.5
2,851,140	+		CSW01_13390	0.46	-1.2
2,851,140	+		CSW01_13390	0.46	+0.1
2,851,140	+		CSW01_13390	0.46	-2.5
2,851,140	+		CSW01_13390	0.46	-0.6
2,851,140	+		CSW01_13390	0.46	-2.6
2,851,145	+		CSW01_13390	0.46	-2.6
2,851,148	-		CSW01_13390	0.46	-2.2
2,851,273	+		CSW01_13390	0.51	-0.9
2,851,293	+		CSW01_13390	0.52	-3.4
2,851,293	+		CSW01_13390	0.52	+0.4
2,851,293	+		CSW01_13390	0.52	-1.5
2,851,305	+		CSW01_13390	0.52	+1.1
2,851,308	-		CSW01_13390	0.52	-1.7
2,851,315	+		CSW01_13390	0.53	+0.2
2,851,315	+		CSW01_13390	0.53	+0.8
2,851,315	+		CSW01_13390	0.53	-0.5
2,851,315	+		CSW01_13390	0.53	-1.9
2,851,315	+		CSW01_13390	0.53	+1.8
2,851,323	-		CSW01_13390	0.53	+0.3
2,851,323	-		CSW01_13390	0.53	+1.7
2,851,323	-		CSW01_13390	0.53	-0.5
2,851,323	-		CSW01_13390	0.53	-0.2
2,851,323	-		CSW01_13390	0.53	-1.2
2,851,323	-		CSW01_13390	0.53	-0.2
2,851,332	+		CSW01_13390	0.53	+0.9
2,851,424	-		CSW01_13390	0.57	-1.9
2,851,443	+		CSW01_13390	0.57	+1.6
2,851,443	-		CSW01_13390	0.57	-2.7
2,851,484	-		CSW01_13390	0.59	-1.6
2,851,484	-		CSW01_13390	0.59	-0.4
2,851,509	+		CSW01_13390	0.60	+0.5
2,851,517	-		CSW01_13390	0.60	+1.2
2,851,570	+		CSW01_13390	0.62	-1.2
2,851,578	-		CSW01_13390	0.63	-2.7
2,851,578	-		CSW01_13390	0.63	-0.4
2,851,589	+		CSW01_13390	0.63	-1.9
2,851,623	-		CSW01_13390	0.64	+0.4
2,851,730	+		CSW01_13390	0.68	-1.8
2,851,777	+		CSW01_13390	0.70	-2.0
2,851,781	+		CSW01_13390	0.70	-4.2
2,851,812	+		CSW01_13390	0.71	+1.7
2,851,820	-		CSW01_13390	0.72	+0.4
2,851,820	-		CSW01_13390	0.72	-1.9
2,851,820	-		CSW01_13390	0.72	-0.2
2,851,828	-		CSW01_13390	0.72	+1.5
2,851,860	+		CSW01_13390	0.73	+0.8
2,851,863	-		CSW01_13390	0.73	-0.2
2,851,915	+		CSW01_13390	0.75	-0.6
2,851,988	-		CSW01_13390	0.78	-2.2
2,852,013	+		CSW01_13390	0.79	-0.2
2,852,048	+		CSW01_13390	0.80	+0.2
2,852,167	-		CSW01_13390	0.85	+1.0
2,852,210	-		CSW01_13390	0.87	-3.4
2,852,218	-		CSW01_13390	0.87	+2.3
2,852,338	+				+0.8
2,852,346	-				+2.6
2,852,346	-				+1.1
2,852,346	-				-1.1
2,852,346	-				+1.2
2,852,348	+				+0.1
2,852,386	-				+0.4
2,852,416	+				-0.9
2,852,427	+				+0.6
2,852,427	+				-2.8
2,852,430	-				+0.7
2,852,437	+				-1.5
2,852,451	+				+1.0
2,852,461	+				-1.1
2,852,469	-				+1.7
2,852,486	-				-0.7
2,852,727	+				+0.1
2,852,748	+				+0.1
2,852,767	-				-0.7
2,852,773	-				-0.2
2,852,867	+				-2.4
2,852,889	+				-2.7
2,852,889	+				+0.2
2,852,935	+				+0.9
2,852,935	+				-0.5
2,852,949	+				+2.7
2,852,957	-				+0.4
2,852,993	+		CSW01_13395	0.13	+1.1
2,853,012	-		CSW01_13395	0.17	-0.4
2,853,022	-		CSW01_13395	0.19	+0.3
2,853,028	+		CSW01_13395	0.20	+1.0
2,853,038	+		CSW01_13395	0.21	-1.5
2,853,043	+		CSW01_13395	0.22	+0.2
2,853,043	+		CSW01_13395	0.22	+1.1
2,853,112	-		CSW01_13395	0.35	-1.8
2,853,134	+		CSW01_13395	0.39	+0.3
2,853,256	+		CSW01_13395	0.62	-0.7
2,853,256	-		CSW01_13395	0.62	+0.6
2,853,256	-		CSW01_13395	0.62	-0.2
2,853,256	-		CSW01_13395	0.62	-2.9
2,853,283	-		CSW01_13395	0.67	-3.6
2,853,344	-		CSW01_13395	0.78	-0.8
2,853,373	+		CSW01_13395	0.84	+0.1
2,853,379	-		CSW01_13395	0.85	-0.8
2,853,381	-		CSW01_13395	0.85	-2.1
2,853,381	-		CSW01_13395	0.85	-2.9
2,853,421	-				+0.9
2,853,434	-				+0.4
2,853,463	-				+0.6
2,853,466	+				-2.5
2,853,542	+				-0.6
2,853,563	+				-0.5