Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12965

Experiment: ICP3_phage_4.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_4.1_MOI_rep1
2,772,722	+				+1.2
2,772,755	+				-1.6
2,772,763	-				+0.8
2,772,766	+				+0.6
2,772,766	+				+0.7
2,772,766	+				-4.3
2,772,831	+		CSW01_12960	0.15	-3.3
2,772,841	+		CSW01_12960	0.16	+1.2
2,772,849	-		CSW01_12960	0.17	+0.4
2,772,850	+		CSW01_12960	0.17	-2.9
2,772,858	-		CSW01_12960	0.18	-0.1
2,772,873	+		CSW01_12960	0.19	+0.7
2,772,887	+		CSW01_12960	0.21	+2.8
2,772,894	+		CSW01_12960	0.21	-1.8
2,772,894	+		CSW01_12960	0.21	-1.1
2,772,924	+		CSW01_12960	0.24	-3.7
2,772,939	+		CSW01_12960	0.26	-1.4
2,772,939	+		CSW01_12960	0.26	+2.1
2,772,939	+		CSW01_12960	0.26	+1.0
2,772,942	-		CSW01_12960	0.26	+0.8
2,772,954	+		CSW01_12960	0.28	-0.5
2,772,977	+		CSW01_12960	0.30	-1.7
2,772,987	+		CSW01_12960	0.31	+1.3
2,773,030	-		CSW01_12960	0.36	+0.4
2,773,102	+		CSW01_12960	0.43	-0.6
2,773,152	+		CSW01_12960	0.49	+0.1
2,773,152	+		CSW01_12960	0.49	+0.9
2,773,160	-		CSW01_12960	0.49	+0.7
2,773,200	+		CSW01_12960	0.54	+1.3
2,773,241	+		CSW01_12960	0.58	+0.4
2,773,273	+		CSW01_12960	0.61	+0.2
2,773,273	+		CSW01_12960	0.61	-0.2
2,773,273	+		CSW01_12960	0.61	+2.1
2,773,273	+		CSW01_12960	0.61	-2.8
2,773,281	-		CSW01_12960	0.62	-0.3
2,773,281	-		CSW01_12960	0.62	+0.8
2,773,281	-		CSW01_12960	0.62	-0.6
2,773,407	+		CSW01_12960	0.75	-2.0
2,773,453	-		CSW01_12960	0.80	+3.7
2,773,560	+				+0.8
2,773,570	+				+0.2
2,773,624	+				+0.2
2,773,642	+				+1.2
2,773,642	+				-2.1
2,773,642	+				-2.6
2,773,642	+				+2.2
2,773,642	+				+0.5
2,773,650	-				+2.1
2,773,650	-				-0.8
2,773,650	-				+1.4
2,773,650	-				-1.8
2,773,700	+				-1.7
2,773,700	+				+0.8
2,773,700	+				-0.1
2,773,700	+				+0.6
2,773,708	-				-2.1
2,773,727	-				+0.3
2,773,737	-				-2.0
2,773,747	+				-0.1
2,773,752	+				+2.4
2,773,762	+				-0.1
2,773,770	-				-1.3
2,773,848	+		CSW01_12965	0.16	-0.7
2,773,848	+		CSW01_12965	0.16	-0.6
2,773,848	+		CSW01_12965	0.16	-2.5
2,773,871	+		CSW01_12965	0.19	+0.7
2,773,902	+		CSW01_12965	0.22	-0.1
2,773,920	-		CSW01_12965	0.24	+0.3
2,773,936	+		CSW01_12965	0.26	-1.9
2,773,956	-		CSW01_12965	0.28	-0.9
2,773,958	+		CSW01_12965	0.28	+0.8
2,773,958	+		CSW01_12965	0.28	+1.5
2,773,958	+		CSW01_12965	0.28	-2.1
2,773,958	+		CSW01_12965	0.28	-1.7
2,773,958	+		CSW01_12965	0.28	-2.4
2,773,958	+		CSW01_12965	0.28	+1.8
2,773,958	+		CSW01_12965	0.28	-2.7
2,773,961	-		CSW01_12965	0.29	+1.5
2,773,966	-		CSW01_12965	0.29	-2.1
2,773,966	-		CSW01_12965	0.29	-0.1
2,773,966	-		CSW01_12965	0.29	-3.7
2,773,966	-		CSW01_12965	0.29	-1.8
2,773,966	-		CSW01_12965	0.29	+0.6
2,773,966	-		CSW01_12965	0.29	-2.2
2,774,002	+		CSW01_12965	0.33	+0.6
2,774,010	-		CSW01_12965	0.34	-0.3
2,774,010	-		CSW01_12965	0.34	+0.1
2,774,020	-		CSW01_12965	0.35	+0.4
2,774,020	-		CSW01_12965	0.35	-0.3
2,774,054	-		CSW01_12965	0.39	-0.2
2,774,054	-		CSW01_12965	0.39	+1.0
2,774,104	+		CSW01_12965	0.45	+0.5
2,774,157	+		CSW01_12965	0.50	+2.4
2,774,214	+		CSW01_12965	0.57	+1.0
2,774,256	+		CSW01_12965	0.61	-1.0
2,774,291	+		CSW01_12965	0.65	+0.6
2,774,291	+		CSW01_12965	0.65	-2.5
2,774,291	+		CSW01_12965	0.65	-2.6
2,774,291	+		CSW01_12965	0.65	+0.5
2,774,299	-		CSW01_12965	0.66	-2.9
2,774,299	-		CSW01_12965	0.66	-2.1
2,774,299	-		CSW01_12965	0.66	+0.4
2,774,299	-		CSW01_12965	0.66	-1.0
2,774,299	-		CSW01_12965	0.66	-0.2
2,774,326	-		CSW01_12965	0.69	-3.7
2,774,326	-		CSW01_12965	0.69	+1.2
2,774,326	-		CSW01_12965	0.69	+1.5
2,774,362	+		CSW01_12965	0.73	+0.3
2,774,423	+		CSW01_12965	0.80	-1.3
2,774,431	-		CSW01_12965	0.81	-2.2
2,774,436	-		CSW01_12965	0.81	+3.2
2,774,443	+		CSW01_12965	0.82	-3.0
2,774,498	+		CSW01_12965	0.88	-3.4
2,774,498	+		CSW01_12965	0.88	+0.7
2,774,498	+		CSW01_12965	0.88	+0.6
2,774,506	-		CSW01_12965	0.89	+0.1
2,774,506	-		CSW01_12965	0.89	+0.2
2,774,587	+				+0.6
2,774,592	+				+0.7
2,774,690	+				+1.0
2,774,697	+				-0.1
2,774,698	-				+0.2
2,774,718	+				+0.7
2,774,719	+				-1.1
2,774,750	-				-1.0
2,774,871	+				+0.6
2,774,880	-				+0.1
2,774,892	-				-0.3
2,775,016	+				+0.5
2,775,076	-				+0.3
2,775,100	+		CSW01_12970	0.11	-1.1
2,775,100	+		CSW01_12970	0.11	-0.2
2,775,100	+		CSW01_12970	0.11	-0.1
2,775,100	+		CSW01_12970	0.11	-0.7
2,775,108	-		CSW01_12970	0.11	+1.3
2,775,136	+		CSW01_12970	0.13	-1.5
2,775,144	-		CSW01_12970	0.13	-0.3
2,775,167	-		CSW01_12970	0.14	-0.8
2,775,187	+		CSW01_12970	0.15	-1.2
2,775,227	+		CSW01_12970	0.17	-0.9
2,775,227	+		CSW01_12970	0.17	+2.1
2,775,227	+		CSW01_12970	0.17	+2.2
2,775,227	+		CSW01_12970	0.17	+0.7
2,775,227	+		CSW01_12970	0.17	-0.8
2,775,235	-		CSW01_12970	0.18	-3.4
2,775,235	-		CSW01_12970	0.18	-3.9
2,775,235	-		CSW01_12970	0.18	+0.8
2,775,235	-		CSW01_12970	0.18	+0.3
2,775,235	-		CSW01_12970	0.18	-3.2
2,775,235	-		CSW01_12970	0.18	+0.7
2,775,235	-		CSW01_12970	0.18	-0.6
2,775,277	-		CSW01_12970	0.20	-3.3
2,775,310	+		CSW01_12970	0.22	-1.7
2,775,323	-		CSW01_12970	0.22	-1.3
2,775,354	-		CSW01_12970	0.24	+2.5
2,775,354	-		CSW01_12970	0.24	+0.0
2,775,364	+		CSW01_12970	0.24	+1.2
2,775,370	-		CSW01_12970	0.25	-3.6
2,775,386	+		CSW01_12970	0.25	-4.8
2,775,386	+		CSW01_12970	0.25	+1.1
2,775,386	+		CSW01_12970	0.25	-0.4
2,775,386	+		CSW01_12970	0.25	-0.3
2,775,386	+		CSW01_12970	0.25	+0.3
2,775,394	-		CSW01_12970	0.26	-2.9
2,775,394	-		CSW01_12970	0.26	-1.9
2,775,394	-		CSW01_12970	0.26	-0.4
2,775,394	-		CSW01_12970	0.26	+0.4
2,775,394	-		CSW01_12970	0.26	+0.2
2,775,394	-		CSW01_12970	0.26	+0.6
2,775,437	+		CSW01_12970	0.28	+0.1
2,775,437	+		CSW01_12970	0.28	-3.2
2,775,484	+		CSW01_12970	0.30	-1.2
2,775,583	+		CSW01_12970	0.35	+0.2
2,775,585	+		CSW01_12970	0.36	-1.2