Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09405

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09395 and CSW01_09400 overlap by 1 nucleotidesCSW01_09400 and CSW01_09405 overlap by 20 nucleotidesCSW01_09405 and CSW01_09410 overlap by 1 nucleotides CSW01_09395: CSW01_09395 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,018,716 to 2,019,474 _09395 CSW01_09400: CSW01_09400 - hypothetical protein, at 2,019,474 to 2,019,653 _09400 CSW01_09405: CSW01_09405 - tetraacyldisaccharide 4'-kinase, at 2,019,634 to 2,020,644 _09405 CSW01_09410: CSW01_09410 - lipid A export ATP-binding/permease MsbA, at 2,020,644 to 2,022,392 _09410 Position (kb) 2019 2020 2021Strain fitness (log2 ratio) -2 -1 0 1at 2018.655 kb on + strandat 2018.716 kb on + strandat 2019.552 kb on - strand, within CSW01_09400at 2019.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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2,018,655 + -1.3
2,018,716 + -0.6
2,019,552 - CSW01_09400 0.43 -1.6
2,019,655 - -2.2

Or see this region's nucleotide sequence