Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09045 and CSW01_09050 are separated by 89 nucleotides CSW01_09050 and CSW01_09055 are separated by 277 nucleotides CSW01_09055 and CSW01_09060 are separated by 50 nucleotides CSW01_09060 and CSW01_09065 are separated by 106 nucleotides
CSW01_09045: CSW01_09045 - hypothetical protein, at 1,946,548 to 1,946,784
_09045
CSW01_09050: CSW01_09050 - XRE family transcriptional regulator, at 1,946,874 to 1,947,335
_09050
CSW01_09055: CSW01_09055 - DUF2787 domain-containing protein, at 1,947,613 to 1,947,876
_09055
CSW01_09060: CSW01_09060 - DUF2787 domain-containing protein, at 1,947,927 to 1,948,373
_09060
CSW01_09065: CSW01_09065 - GTPase, at 1,948,480 to 1,949,466
_09065
Position (kb) 1947
1948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1946.625 kb on + strand, within CSW01_09045 at 1946.639 kb on + strand, within CSW01_09045 at 1946.642 kb on - strand, within CSW01_09045 at 1946.644 kb on + strand, within CSW01_09045 at 1947.471 kb on - strand at 1947.482 kb on - strand at 1947.595 kb on - strand at 1947.596 kb on + strand at 1947.596 kb on + strand at 1947.596 kb on + strand at 1947.604 kb on - strand at 1947.618 kb on + strand at 1947.619 kb on - strand at 1947.689 kb on + strand, within CSW01_09055 at 1947.716 kb on + strand, within CSW01_09055 at 1947.716 kb on + strand, within CSW01_09055 at 1947.716 kb on + strand, within CSW01_09055 at 1947.851 kb on + strand at 1947.859 kb on - strand at 1947.949 kb on - strand at 1947.981 kb on + strand, within CSW01_09060 at 1948.069 kb on + strand, within CSW01_09060 at 1948.078 kb on + strand, within CSW01_09060 at 1948.124 kb on + strand, within CSW01_09060 at 1948.124 kb on + strand, within CSW01_09060 at 1948.132 kb on - strand, within CSW01_09060 at 1948.132 kb on - strand, within CSW01_09060 at 1948.132 kb on - strand, within CSW01_09060 at 1948.154 kb on - strand, within CSW01_09060 at 1948.161 kb on + strand, within CSW01_09060 at 1948.250 kb on - strand, within CSW01_09060 at 1948.298 kb on + strand, within CSW01_09060 at 1948.416 kb on - strand at 1948.420 kb on + strand at 1948.476 kb on - strand at 1948.599 kb on - strand, within CSW01_09065 at 1948.621 kb on - strand, within CSW01_09065 at 1948.698 kb on + strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.756 kb on - strand, within CSW01_09065 at 1948.872 kb on - strand, within CSW01_09065
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 1,946,625 + CSW01_09045 0.32 -0.2 1,946,639 + CSW01_09045 0.38 +0.5 1,946,642 - CSW01_09045 0.40 -3.4 1,946,644 + CSW01_09045 0.41 -0.5 1,947,471 - -2.0 1,947,482 - +1.4 1,947,595 - -1.3 1,947,596 + -0.4 1,947,596 + -2.7 1,947,596 + +1.3 1,947,604 - +0.2 1,947,618 + -2.3 1,947,619 - -3.1 1,947,689 + CSW01_09055 0.29 +1.1 1,947,716 + CSW01_09055 0.39 +0.1 1,947,716 + CSW01_09055 0.39 -2.8 1,947,716 + CSW01_09055 0.39 +0.5 1,947,851 + +1.8 1,947,859 - -0.4 1,947,949 - -0.7 1,947,981 + CSW01_09060 0.12 +1.5 1,948,069 + CSW01_09060 0.32 +1.9 1,948,078 + CSW01_09060 0.34 +0.6 1,948,124 + CSW01_09060 0.44 +0.6 1,948,124 + CSW01_09060 0.44 +1.7 1,948,132 - CSW01_09060 0.46 -0.3 1,948,132 - CSW01_09060 0.46 -2.2 1,948,132 - CSW01_09060 0.46 -0.1 1,948,154 - CSW01_09060 0.51 +0.6 1,948,161 + CSW01_09060 0.52 +0.9 1,948,250 - CSW01_09060 0.72 -0.0 1,948,298 + CSW01_09060 0.83 +0.4 1,948,416 - +0.3 1,948,420 + -0.2 1,948,476 - +0.9 1,948,599 - CSW01_09065 0.12 +0.6 1,948,621 - CSW01_09065 0.14 +1.4 1,948,698 + CSW01_09065 0.22 -0.6 1,948,716 - CSW01_09065 0.24 +1.5 1,948,716 - CSW01_09065 0.24 -2.3 1,948,716 - CSW01_09065 0.24 +0.9 1,948,748 + CSW01_09065 0.27 -2.7 1,948,748 + CSW01_09065 0.27 +0.0 1,948,748 + CSW01_09065 0.27 -1.5 1,948,748 + CSW01_09065 0.27 -1.1 1,948,748 + CSW01_09065 0.27 -0.5 1,948,756 - CSW01_09065 0.28 -1.0 1,948,872 - CSW01_09065 0.40 +0.7
Or see this region's nucleotide sequence