Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06060

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06050 and CSW01_06055 are separated by 124 nucleotidesCSW01_06055 and CSW01_06060 are separated by 170 nucleotidesCSW01_06060 and CSW01_06065 are separated by 49 nucleotidesCSW01_06065 and CSW01_06070 are separated by 249 nucleotides CSW01_06050: CSW01_06050 - DUF2786 domain-containing protein, at 1,267,361 to 1,268,050 _06050 CSW01_06055: CSW01_06055 - DUF3334 domain-containing protein, at 1,268,175 to 1,268,870 _06055 CSW01_06060: CSW01_06060 - FAD-binding oxidoreductase, at 1,269,041 to 1,272,106 _06060 CSW01_06065: CSW01_06065 - isoprenylcysteine carboxylmethyltransferase family protein, at 1,272,156 to 1,272,623 _06065 CSW01_06070: CSW01_06070 - serine protease, at 1,272,873 to 1,274,084 _06070 Position (kb) 1269 1270 1271 1272 1273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1268.143 kb on + strandat 1268.294 kb on - strand, within CSW01_06055at 1268.332 kb on + strand, within CSW01_06055at 1268.399 kb on + strand, within CSW01_06055at 1268.400 kb on - strand, within CSW01_06055at 1268.418 kb on + strand, within CSW01_06055at 1268.474 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.626 kb on + strand, within CSW01_06055at 1268.666 kb on + strand, within CSW01_06055at 1268.704 kb on - strand, within CSW01_06055at 1268.755 kb on + strand, within CSW01_06055at 1268.775 kb on - strand, within CSW01_06055at 1268.784 kb on + strand, within CSW01_06055at 1268.801 kb on - strandat 1268.836 kb on - strandat 1268.836 kb on - strandat 1268.981 kb on + strandat 1269.084 kb on - strandat 1269.199 kb on + strandat 1269.355 kb on + strand, within CSW01_06060at 1269.357 kb on + strand, within CSW01_06060at 1269.434 kb on + strand, within CSW01_06060at 1269.549 kb on - strand, within CSW01_06060at 1269.549 kb on - strand, within CSW01_06060at 1269.560 kb on + strand, within CSW01_06060at 1269.560 kb on + strand, within CSW01_06060at 1269.658 kb on + strand, within CSW01_06060at 1269.660 kb on - strand, within CSW01_06060at 1269.666 kb on - strand, within CSW01_06060at 1269.843 kb on - strand, within CSW01_06060at 1269.926 kb on + strand, within CSW01_06060at 1269.942 kb on + strand, within CSW01_06060at 1269.952 kb on + strand, within CSW01_06060at 1269.952 kb on + strand, within CSW01_06060at 1270.005 kb on + strand, within CSW01_06060at 1270.040 kb on + strand, within CSW01_06060at 1270.048 kb on - strand, within CSW01_06060at 1270.050 kb on + strand, within CSW01_06060at 1270.050 kb on + strand, within CSW01_06060at 1270.058 kb on - strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.118 kb on + strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.126 kb on - strand, within CSW01_06060at 1270.185 kb on - strand, within CSW01_06060at 1270.289 kb on + strand, within CSW01_06060at 1270.289 kb on + strand, within CSW01_06060at 1270.337 kb on - strand, within CSW01_06060at 1270.348 kb on - strand, within CSW01_06060at 1270.408 kb on - strand, within CSW01_06060at 1270.459 kb on - strand, within CSW01_06060at 1270.510 kb on + strand, within CSW01_06060at 1270.540 kb on + strand, within CSW01_06060at 1270.543 kb on - strand, within CSW01_06060at 1270.555 kb on + strand, within CSW01_06060at 1270.561 kb on + strand, within CSW01_06060at 1270.608 kb on + strand, within CSW01_06060at 1270.609 kb on - strand, within CSW01_06060at 1270.613 kb on + strand, within CSW01_06060at 1270.621 kb on - strand, within CSW01_06060at 1270.621 kb on - strand, within CSW01_06060at 1270.621 kb on - strand, within CSW01_06060at 1270.677 kb on - strand, within CSW01_06060at 1270.679 kb on - strand, within CSW01_06060at 1270.687 kb on - strand, within CSW01_06060at 1270.710 kb on - strand, within CSW01_06060at 1270.710 kb on - strand, within CSW01_06060at 1270.711 kb on - strand, within CSW01_06060at 1270.786 kb on + strand, within CSW01_06060at 1270.794 kb on - strand, within CSW01_06060at 1270.794 kb on - strand, within CSW01_06060at 1270.889 kb on + strand, within CSW01_06060at 1270.889 kb on + strand, within CSW01_06060at 1271.021 kb on + strand, within CSW01_06060at 1271.088 kb on + strand, within CSW01_06060at 1271.088 kb on + strand, within CSW01_06060at 1271.165 kb on - strand, within CSW01_06060at 1271.247 kb on - strand, within CSW01_06060at 1271.298 kb on + strand, within CSW01_06060at 1271.347 kb on - strand, within CSW01_06060at 1271.521 kb on + strand, within CSW01_06060at 1271.548 kb on - strand, within CSW01_06060at 1271.554 kb on + strand, within CSW01_06060at 1271.750 kb on - strand, within CSW01_06060at 1271.752 kb on + strand, within CSW01_06060at 1271.835 kb on - strandat 1271.878 kb on + strandat 1271.878 kb on + strandat 1271.886 kb on - strandat 1271.996 kb on + strandat 1272.069 kb on - strandat 1272.069 kb on - strandat 1272.069 kb on - strandat 1272.089 kb on + strandat 1272.089 kb on + strandat 1272.089 kb on + strandat 1272.089 kb on + strandat 1272.097 kb on - strandat 1272.097 kb on - strandat 1272.148 kb on + strandat 1272.153 kb on - strandat 1272.256 kb on + strand, within CSW01_06065at 1272.277 kb on + strand, within CSW01_06065at 1272.293 kb on + strand, within CSW01_06065at 1272.312 kb on - strand, within CSW01_06065at 1272.393 kb on + strand, within CSW01_06065at 1272.393 kb on + strand, within CSW01_06065at 1272.393 kb on + strand, within CSW01_06065at 1272.393 kb on + strand, within CSW01_06065at 1272.399 kb on - strand, within CSW01_06065at 1272.401 kb on - strand, within CSW01_06065at 1272.401 kb on - strand, within CSW01_06065at 1272.429 kb on + strand, within CSW01_06065at 1272.429 kb on + strand, within CSW01_06065at 1272.450 kb on - strand, within CSW01_06065at 1272.466 kb on - strand, within CSW01_06065at 1272.552 kb on - strand, within CSW01_06065at 1272.582 kb on + strandat 1272.685 kb on + strandat 1272.712 kb on + strandat 1272.922 kb on + strandat 1272.927 kb on + strandat 1272.932 kb on + strandat 1272.932 kb on + strandat 1272.940 kb on - strandat 1273.106 kb on - strand, within CSW01_06070

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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1,268,143 + +0.5
1,268,294 - CSW01_06055 0.17 -0.2
1,268,332 + CSW01_06055 0.23 +1.0
1,268,399 + CSW01_06055 0.32 -0.3
1,268,400 - CSW01_06055 0.32 +0.7
1,268,418 + CSW01_06055 0.35 +1.0
1,268,474 + CSW01_06055 0.43 +0.2
1,268,574 + CSW01_06055 0.57 -3.1
1,268,574 + CSW01_06055 0.57 +1.4
1,268,574 + CSW01_06055 0.57 -4.3
1,268,574 + CSW01_06055 0.57 -0.2
1,268,574 + CSW01_06055 0.57 +1.0
1,268,574 + CSW01_06055 0.57 +1.2
1,268,582 - CSW01_06055 0.58 +1.0
1,268,582 - CSW01_06055 0.58 +0.9
1,268,582 - CSW01_06055 0.58 -0.7
1,268,582 - CSW01_06055 0.58 +0.6
1,268,582 - CSW01_06055 0.58 -0.1
1,268,626 + CSW01_06055 0.65 -3.3
1,268,666 + CSW01_06055 0.71 -0.7
1,268,704 - CSW01_06055 0.76 -1.0
1,268,755 + CSW01_06055 0.83 +0.9
1,268,775 - CSW01_06055 0.86 -1.6
1,268,784 + CSW01_06055 0.88 +1.3
1,268,801 - -0.4
1,268,836 - +0.9
1,268,836 - +1.2
1,268,981 + +1.0
1,269,084 - +0.2
1,269,199 + -2.2
1,269,355 + CSW01_06060 0.10 +0.8
1,269,357 + CSW01_06060 0.10 -1.8
1,269,434 + CSW01_06060 0.13 -1.9
1,269,549 - CSW01_06060 0.17 +0.1
1,269,549 - CSW01_06060 0.17 +2.6
1,269,560 + CSW01_06060 0.17 -2.6
1,269,560 + CSW01_06060 0.17 -3.0
1,269,658 + CSW01_06060 0.20 +0.3
1,269,660 - CSW01_06060 0.20 +0.6
1,269,666 - CSW01_06060 0.20 -1.9
1,269,843 - CSW01_06060 0.26 +0.5
1,269,926 + CSW01_06060 0.29 -1.1
1,269,942 + CSW01_06060 0.29 -2.3
1,269,952 + CSW01_06060 0.30 -2.3
1,269,952 + CSW01_06060 0.30 -0.8
1,270,005 + CSW01_06060 0.31 -0.9
1,270,040 + CSW01_06060 0.33 -2.8
1,270,048 - CSW01_06060 0.33 -2.5
1,270,050 + CSW01_06060 0.33 -1.0
1,270,050 + CSW01_06060 0.33 -0.7
1,270,058 - CSW01_06060 0.33 -1.3
1,270,118 + CSW01_06060 0.35 -2.7
1,270,118 + CSW01_06060 0.35 -2.1
1,270,118 + CSW01_06060 0.35 -0.5
1,270,118 + CSW01_06060 0.35 -2.0
1,270,118 + CSW01_06060 0.35 -1.1
1,270,118 + CSW01_06060 0.35 +0.6
1,270,118 + CSW01_06060 0.35 +0.7
1,270,118 + CSW01_06060 0.35 -3.3
1,270,118 + CSW01_06060 0.35 -0.1
1,270,126 - CSW01_06060 0.35 -2.8
1,270,126 - CSW01_06060 0.35 -0.1
1,270,126 - CSW01_06060 0.35 -1.4
1,270,126 - CSW01_06060 0.35 -0.9
1,270,126 - CSW01_06060 0.35 -0.8
1,270,126 - CSW01_06060 0.35 +1.9
1,270,126 - CSW01_06060 0.35 +0.5
1,270,126 - CSW01_06060 0.35 -0.2
1,270,126 - CSW01_06060 0.35 +1.0
1,270,126 - CSW01_06060 0.35 -0.9
1,270,126 - CSW01_06060 0.35 -0.5
1,270,126 - CSW01_06060 0.35 -2.6
1,270,126 - CSW01_06060 0.35 -0.3
1,270,126 - CSW01_06060 0.35 +0.9
1,270,185 - CSW01_06060 0.37 -0.8
1,270,289 + CSW01_06060 0.41 +0.5
1,270,289 + CSW01_06060 0.41 -1.7
1,270,337 - CSW01_06060 0.42 -1.6
1,270,348 - CSW01_06060 0.43 +1.6
1,270,408 - CSW01_06060 0.45 -1.2
1,270,459 - CSW01_06060 0.46 -0.1
1,270,510 + CSW01_06060 0.48 +0.4
1,270,540 + CSW01_06060 0.49 -0.2
1,270,543 - CSW01_06060 0.49 +0.2
1,270,555 + CSW01_06060 0.49 -0.6
1,270,561 + CSW01_06060 0.50 -1.6
1,270,608 + CSW01_06060 0.51 -1.4
1,270,609 - CSW01_06060 0.51 +0.5
1,270,613 + CSW01_06060 0.51 -0.3
1,270,621 - CSW01_06060 0.52 -1.5
1,270,621 - CSW01_06060 0.52 -2.4
1,270,621 - CSW01_06060 0.52 +0.2
1,270,677 - CSW01_06060 0.53 +0.7
1,270,679 - CSW01_06060 0.53 -1.6
1,270,687 - CSW01_06060 0.54 +0.5
1,270,710 - CSW01_06060 0.54 -3.0
1,270,710 - CSW01_06060 0.54 -2.9
1,270,711 - CSW01_06060 0.54 -1.9
1,270,786 + CSW01_06060 0.57 -3.2
1,270,794 - CSW01_06060 0.57 +0.1
1,270,794 - CSW01_06060 0.57 +0.7
1,270,889 + CSW01_06060 0.60 +1.5
1,270,889 + CSW01_06060 0.60 +1.1
1,271,021 + CSW01_06060 0.65 +1.1
1,271,088 + CSW01_06060 0.67 +0.6
1,271,088 + CSW01_06060 0.67 -1.5
1,271,165 - CSW01_06060 0.69 -3.2
1,271,247 - CSW01_06060 0.72 -1.9
1,271,298 + CSW01_06060 0.74 +1.1
1,271,347 - CSW01_06060 0.75 -1.2
1,271,521 + CSW01_06060 0.81 -0.2
1,271,548 - CSW01_06060 0.82 -2.0
1,271,554 + CSW01_06060 0.82 +0.9
1,271,750 - CSW01_06060 0.88 -3.6
1,271,752 + CSW01_06060 0.88 +0.6
1,271,835 - +0.5
1,271,878 + +1.4
1,271,878 + +0.9
1,271,886 - +0.1
1,271,996 + +0.5
1,272,069 - +1.6
1,272,069 - +0.1
1,272,069 - +1.2
1,272,089 + -1.4
1,272,089 + +1.3
1,272,089 + +0.4
1,272,089 + -0.3
1,272,097 - +2.0
1,272,097 - -0.2
1,272,148 + +0.2
1,272,153 - +1.2
1,272,256 + CSW01_06065 0.21 -2.2
1,272,277 + CSW01_06065 0.26 -0.8
1,272,293 + CSW01_06065 0.29 -0.5
1,272,312 - CSW01_06065 0.33 -0.2
1,272,393 + CSW01_06065 0.51 -1.3
1,272,393 + CSW01_06065 0.51 +0.8
1,272,393 + CSW01_06065 0.51 +0.1
1,272,393 + CSW01_06065 0.51 +0.1
1,272,399 - CSW01_06065 0.52 -2.0
1,272,401 - CSW01_06065 0.52 -0.0
1,272,401 - CSW01_06065 0.52 +0.7
1,272,429 + CSW01_06065 0.58 -2.3
1,272,429 + CSW01_06065 0.58 +2.1
1,272,450 - CSW01_06065 0.63 -0.8
1,272,466 - CSW01_06065 0.66 +0.4
1,272,552 - CSW01_06065 0.85 +0.5
1,272,582 + -0.7
1,272,685 + +3.5
1,272,712 + -2.3
1,272,922 + -1.5
1,272,927 + +1.6
1,272,932 + -0.6
1,272,932 + -1.7
1,272,940 - -0.4
1,273,106 - CSW01_06070 0.19 +0.9

Or see this region's nucleotide sequence