Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04505 and CSW01_04510 are separated by 134 nucleotides CSW01_04510 and CSW01_04515 overlap by 4 nucleotides CSW01_04515 and CSW01_04520 are separated by 200 nucleotides
CSW01_04505: CSW01_04505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 938,534 to 939,229
_04505
CSW01_04510: CSW01_04510 - 50S ribosomal protein L31 type B, at 939,364 to 939,621
_04510
CSW01_04515: CSW01_04515 - 50S ribosomal protein L36, at 939,618 to 939,743
_04515
CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530
_04520
Position (kb) 939
940 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 938.563 kb on - strand at 938.621 kb on + strand, within CSW01_04505 at 938.681 kb on + strand, within CSW01_04505 at 938.689 kb on - strand, within CSW01_04505 at 938.736 kb on + strand, within CSW01_04505 at 938.858 kb on - strand, within CSW01_04505 at 938.886 kb on - strand, within CSW01_04505 at 939.037 kb on + strand, within CSW01_04505 at 939.045 kb on - strand, within CSW01_04505 at 939.077 kb on - strand, within CSW01_04505 at 939.105 kb on + strand, within CSW01_04505 at 939.115 kb on - strand, within CSW01_04505 at 939.115 kb on - strand, within CSW01_04505 at 939.440 kb on + strand, within CSW01_04510 at 939.440 kb on + strand, within CSW01_04510 at 939.466 kb on + strand, within CSW01_04510 at 939.474 kb on - strand, within CSW01_04510 at 939.526 kb on - strand, within CSW01_04510 at 939.526 kb on - strand, within CSW01_04510 at 939.536 kb on - strand, within CSW01_04510 at 939.634 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.730 kb on - strand, within CSW01_04515 at 939.920 kb on + strand at 939.938 kb on + strand at 939.946 kb on - strand at 939.946 kb on - strand at 940.039 kb on - strand at 940.039 kb on - strand at 940.104 kb on + strand, within CSW01_04520 at 940.118 kb on + strand, within CSW01_04520 at 940.194 kb on - strand, within CSW01_04520 at 940.200 kb on + strand, within CSW01_04520 at 940.200 kb on + strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.208 kb on - strand, within CSW01_04520 at 940.234 kb on - strand, within CSW01_04520 at 940.250 kb on + strand, within CSW01_04520 at 940.250 kb on + strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.258 kb on - strand, within CSW01_04520 at 940.304 kb on + strand, within CSW01_04520 at 940.312 kb on - strand, within CSW01_04520 at 940.312 kb on - strand, within CSW01_04520 at 940.341 kb on - strand, within CSW01_04520 at 940.352 kb on - strand, within CSW01_04520 at 940.414 kb on - strand, within CSW01_04520 at 940.445 kb on - strand, within CSW01_04520 at 940.469 kb on - strand, within CSW01_04520 at 940.469 kb on - strand, within CSW01_04520 at 940.531 kb on + strand, within CSW01_04520 at 940.608 kb on + strand, within CSW01_04520
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 938,563 - +0.2 938,621 + CSW01_04505 0.12 -3.4 938,681 + CSW01_04505 0.21 +0.3 938,689 - CSW01_04505 0.22 +0.1 938,736 + CSW01_04505 0.29 +0.5 938,858 - CSW01_04505 0.47 -3.8 938,886 - CSW01_04505 0.51 +0.9 939,037 + CSW01_04505 0.72 -0.9 939,045 - CSW01_04505 0.73 +1.9 939,077 - CSW01_04505 0.78 -0.6 939,105 + CSW01_04505 0.82 +0.8 939,115 - CSW01_04505 0.83 +0.7 939,115 - CSW01_04505 0.83 -0.4 939,440 + CSW01_04510 0.29 +0.7 939,440 + CSW01_04510 0.29 +1.4 939,466 + CSW01_04510 0.40 +2.4 939,474 - CSW01_04510 0.43 +0.5 939,526 - CSW01_04510 0.63 +0.9 939,526 - CSW01_04510 0.63 +0.7 939,536 - CSW01_04510 0.67 -0.3 939,634 - CSW01_04515 0.13 -3.1 939,730 - CSW01_04515 0.89 -3.3 939,730 - CSW01_04515 0.89 +0.8 939,730 - CSW01_04515 0.89 +0.3 939,730 - CSW01_04515 0.89 -0.1 939,920 + -3.5 939,938 + +1.2 939,946 - -1.1 939,946 - +0.2 940,039 - -0.0 940,039 - -0.6 940,104 + CSW01_04520 0.10 -1.1 940,118 + CSW01_04520 0.11 -0.9 940,194 - CSW01_04520 0.16 +0.2 940,200 + CSW01_04520 0.16 +1.1 940,200 + CSW01_04520 0.16 +1.0 940,208 - CSW01_04520 0.17 -0.5 940,208 - CSW01_04520 0.17 +2.0 940,208 - CSW01_04520 0.17 +0.7 940,234 - CSW01_04520 0.18 +2.4 940,250 + CSW01_04520 0.19 -0.0 940,250 + CSW01_04520 0.19 +1.9 940,258 - CSW01_04520 0.20 +0.2 940,258 - CSW01_04520 0.20 +0.7 940,258 - CSW01_04520 0.20 -1.3 940,304 + CSW01_04520 0.23 -2.7 940,312 - CSW01_04520 0.23 +1.6 940,312 - CSW01_04520 0.23 -1.7 940,341 - CSW01_04520 0.25 -0.1 940,352 - CSW01_04520 0.26 +0.9 940,414 - CSW01_04520 0.30 +2.1 940,445 - CSW01_04520 0.32 -0.1 940,469 - CSW01_04520 0.33 -1.4 940,469 - CSW01_04520 0.33 +0.9 940,531 + CSW01_04520 0.37 +0.7 940,608 + CSW01_04520 0.42 -0.0
Or see this region's nucleotide sequence