Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04080

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04070 and CSW01_04075 are separated by 124 nucleotidesCSW01_04075 and CSW01_04080 are separated by 165 nucleotidesCSW01_04080 and CSW01_04085 are separated by 33 nucleotidesCSW01_04085 and CSW01_04090 are separated by 13 nucleotides CSW01_04070: CSW01_04070 - LysR family transcriptional regulator, at 842,469 to 843,401 _04070 CSW01_04075: CSW01_04075 - 4,5-dioxygenase, at 843,526 to 843,855 _04075 CSW01_04080: CSW01_04080 - hypothetical protein, at 844,021 to 844,293 _04080 CSW01_04085: CSW01_04085 - response regulator, at 844,327 to 845,010 _04085 CSW01_04090: CSW01_04090 - sensor histidine kinase, at 845,024 to 846,721 _04090 Position (kb) 844 845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 843.030 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.066 kb on - strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.106 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.120 kb on + strand, within CSW01_04070at 843.152 kb on - strand, within CSW01_04070at 843.165 kb on + strand, within CSW01_04070at 843.178 kb on + strand, within CSW01_04070at 843.236 kb on + strand, within CSW01_04070at 843.381 kb on - strandat 843.471 kb on + strandat 843.471 kb on + strandat 843.476 kb on + strandat 843.476 kb on + strandat 843.479 kb on - strandat 843.489 kb on - strandat 843.489 kb on - strandat 843.489 kb on - strandat 843.494 kb on - strandat 843.510 kb on + strandat 843.518 kb on - strandat 843.518 kb on - strandat 843.518 kb on - strandat 843.629 kb on + strand, within CSW01_04075at 843.642 kb on - strand, within CSW01_04075at 843.644 kb on + strand, within CSW01_04075at 843.644 kb on + strand, within CSW01_04075at 843.652 kb on - strand, within CSW01_04075at 843.652 kb on - strand, within CSW01_04075at 843.665 kb on - strand, within CSW01_04075at 843.709 kb on - strand, within CSW01_04075at 843.713 kb on + strand, within CSW01_04075at 843.721 kb on - strand, within CSW01_04075at 843.742 kb on + strand, within CSW01_04075at 843.742 kb on + strand, within CSW01_04075at 843.750 kb on - strand, within CSW01_04075at 843.773 kb on + strand, within CSW01_04075at 843.811 kb on - strand, within CSW01_04075at 843.845 kb on + strandat 843.850 kb on + strandat 843.854 kb on + strandat 843.858 kb on - strandat 843.955 kb on + strandat 843.972 kb on + strandat 844.005 kb on + strandat 844.065 kb on - strand, within CSW01_04080at 844.126 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.247 kb on + strand, within CSW01_04080at 844.259 kb on + strand, within CSW01_04080at 844.333 kb on - strandat 844.347 kb on + strandat 844.374 kb on + strandat 844.382 kb on - strandat 844.480 kb on - strand, within CSW01_04085at 844.538 kb on - strand, within CSW01_04085at 844.565 kb on + strand, within CSW01_04085at 844.688 kb on + strand, within CSW01_04085at 844.717 kb on + strand, within CSW01_04085at 844.717 kb on + strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.800 kb on - strand, within CSW01_04085at 844.800 kb on - strand, within CSW01_04085at 844.941 kb on + strand, within CSW01_04085at 844.949 kb on - strandat 844.949 kb on - strandat 844.949 kb on - strandat 844.996 kb on + strandat 845.113 kb on + strandat 845.170 kb on + strandat 845.176 kb on + strandat 845.176 kb on + strandat 845.178 kb on - strandat 845.222 kb on - strand, within CSW01_04090at 845.256 kb on + strand, within CSW01_04090at 845.284 kb on + strand, within CSW01_04090

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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843,030 + CSW01_04070 0.60 +1.0
843,058 + CSW01_04070 0.63 -0.0
843,058 + CSW01_04070 0.63 -1.1
843,058 + CSW01_04070 0.63 -0.2
843,066 - CSW01_04070 0.64 -0.0
843,101 + CSW01_04070 0.68 -0.9
843,101 + CSW01_04070 0.68 +2.4
843,106 - CSW01_04070 0.68 +0.5
843,109 - CSW01_04070 0.69 -2.3
843,109 - CSW01_04070 0.69 +1.5
843,120 + CSW01_04070 0.70 -2.4
843,152 - CSW01_04070 0.73 -2.8
843,165 + CSW01_04070 0.75 +0.9
843,178 + CSW01_04070 0.76 +0.2
843,236 + CSW01_04070 0.82 +0.0
843,381 - -0.3
843,471 + -1.4
843,471 + -1.4
843,476 + -1.1
843,476 + +0.6
843,479 - +1.2
843,489 - -1.6
843,489 - -0.4
843,489 - +0.0
843,494 - +0.3
843,510 + -2.2
843,518 - +0.5
843,518 - +0.2
843,518 - +0.2
843,629 + CSW01_04075 0.31 +0.6
843,642 - CSW01_04075 0.35 +0.8
843,644 + CSW01_04075 0.36 -0.6
843,644 + CSW01_04075 0.36 +1.9
843,652 - CSW01_04075 0.38 +0.5
843,652 - CSW01_04075 0.38 +3.8
843,665 - CSW01_04075 0.42 +0.0
843,709 - CSW01_04075 0.55 +1.5
843,713 + CSW01_04075 0.57 -1.1
843,721 - CSW01_04075 0.59 -4.1
843,742 + CSW01_04075 0.65 +0.5
843,742 + CSW01_04075 0.65 -2.2
843,750 - CSW01_04075 0.68 -1.3
843,773 + CSW01_04075 0.75 +1.7
843,811 - CSW01_04075 0.86 -3.5
843,845 + +1.3
843,850 + +0.2
843,854 + -0.2
843,858 - -0.1
843,955 + +1.3
843,972 + +2.1
844,005 + -2.6
844,065 - CSW01_04080 0.16 +0.2
844,126 + CSW01_04080 0.38 -0.4
844,136 + CSW01_04080 0.42 -1.5
844,136 + CSW01_04080 0.42 +0.3
844,136 - CSW01_04080 0.42 -1.2
844,144 - CSW01_04080 0.45 +0.0
844,144 - CSW01_04080 0.45 -0.5
844,247 + CSW01_04080 0.83 -1.9
844,259 + CSW01_04080 0.87 +0.3
844,333 - +0.6
844,347 + +0.1
844,374 + -0.2
844,382 - +0.8
844,480 - CSW01_04085 0.22 +0.5
844,538 - CSW01_04085 0.31 -1.5
844,565 + CSW01_04085 0.35 +0.4
844,688 + CSW01_04085 0.53 -0.5
844,717 + CSW01_04085 0.57 +0.4
844,717 + CSW01_04085 0.57 +1.4
844,725 - CSW01_04085 0.58 +1.4
844,725 - CSW01_04085 0.58 +0.3
844,725 - CSW01_04085 0.58 +1.4
844,800 - CSW01_04085 0.69 +1.3
844,800 - CSW01_04085 0.69 +1.1
844,941 + CSW01_04085 0.90 +0.8
844,949 - -2.0
844,949 - -0.1
844,949 - -2.5
844,996 + -0.1
845,113 + -0.1
845,170 + -3.1
845,176 + +0.4
845,176 + -1.8
845,178 - -0.7
845,222 - CSW01_04090 0.12 +0.4
845,256 + CSW01_04090 0.14 +0.2
845,284 + CSW01_04090 0.15 -1.4

Or see this region's nucleotide sequence