Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04030

Experiment: ICP3_phage_4.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04025 and CSW01_04030 overlap by 4 nucleotidesCSW01_04030 and CSW01_04035 overlap by 22 nucleotides CSW01_04025: CSW01_04025 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 831,217 to 832,194 _04025 CSW01_04030: CSW01_04030 - iron ABC transporter permease, at 832,191 to 833,243 _04030 CSW01_04035: CSW01_04035 - Fe(3+)-siderophore ABC transporter permease, at 833,222 to 834,298 _04035 Position (kb) 832 833 834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 831.279 kb on + strandat 831.315 kb on + strand, within CSW01_04025at 831.349 kb on - strand, within CSW01_04025at 831.399 kb on + strand, within CSW01_04025at 831.401 kb on + strand, within CSW01_04025at 831.407 kb on - strand, within CSW01_04025at 831.438 kb on - strand, within CSW01_04025at 831.544 kb on + strand, within CSW01_04025at 831.592 kb on + strand, within CSW01_04025at 831.687 kb on + strand, within CSW01_04025at 831.693 kb on - strand, within CSW01_04025at 831.737 kb on + strand, within CSW01_04025at 831.745 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.815 kb on + strand, within CSW01_04025at 831.823 kb on - strand, within CSW01_04025at 831.851 kb on + strand, within CSW01_04025at 831.876 kb on + strand, within CSW01_04025at 831.886 kb on + strand, within CSW01_04025at 831.948 kb on + strand, within CSW01_04025at 832.058 kb on + strand, within CSW01_04025at 832.106 kb on + strandat 832.111 kb on + strandat 832.113 kb on + strandat 832.114 kb on - strandat 832.215 kb on - strandat 832.436 kb on - strand, within CSW01_04030at 832.454 kb on + strand, within CSW01_04030at 832.498 kb on - strand, within CSW01_04030at 832.537 kb on - strand, within CSW01_04030at 832.559 kb on - strand, within CSW01_04030at 832.566 kb on + strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.602 kb on - strand, within CSW01_04030at 832.605 kb on + strand, within CSW01_04030at 832.628 kb on - strand, within CSW01_04030at 832.661 kb on - strand, within CSW01_04030at 832.667 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.686 kb on + strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.694 kb on - strand, within CSW01_04030at 832.818 kb on - strand, within CSW01_04030at 832.886 kb on + strand, within CSW01_04030at 832.911 kb on - strand, within CSW01_04030at 832.928 kb on - strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.943 kb on + strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.951 kb on - strand, within CSW01_04030at 832.974 kb on + strand, within CSW01_04030at 832.993 kb on - strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.059 kb on + strand, within CSW01_04030at 833.067 kb on - strand, within CSW01_04030at 833.081 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.086 kb on + strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.089 kb on - strand, within CSW01_04030at 833.096 kb on + strand, within CSW01_04030at 833.172 kb on - strandat 833.218 kb on - strandat 833.221 kb on + strandat 833.261 kb on + strandat 833.307 kb on + strandat 833.315 kb on - strandat 833.317 kb on + strandat 833.317 kb on + strandat 833.346 kb on + strand, within CSW01_04035at 833.354 kb on - strand, within CSW01_04035at 833.372 kb on + strand, within CSW01_04035at 833.462 kb on + strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.578 kb on + strand, within CSW01_04035at 833.600 kb on - strand, within CSW01_04035at 833.615 kb on - strand, within CSW01_04035at 833.718 kb on + strand, within CSW01_04035at 833.750 kb on - strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.785 kb on + strand, within CSW01_04035at 833.813 kb on + strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.858 kb on + strand, within CSW01_04035at 833.943 kb on + strand, within CSW01_04035at 833.951 kb on - strand, within CSW01_04035at 834.101 kb on - strand, within CSW01_04035at 834.139 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.157 kb on - strand, within CSW01_04035at 834.162 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.185 kb on - strand, within CSW01_04035at 834.203 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
remove
831,279 + -2.0
831,315 + CSW01_04025 0.10 -2.2
831,349 - CSW01_04025 0.13 -2.6
831,399 + CSW01_04025 0.19 -2.7
831,401 + CSW01_04025 0.19 +0.6
831,407 - CSW01_04025 0.19 +2.0
831,438 - CSW01_04025 0.23 +0.3
831,544 + CSW01_04025 0.33 +0.5
831,592 + CSW01_04025 0.38 -0.7
831,687 + CSW01_04025 0.48 +1.2
831,693 - CSW01_04025 0.49 -2.3
831,737 + CSW01_04025 0.53 -0.0
831,745 - CSW01_04025 0.54 +1.7
831,757 - CSW01_04025 0.55 +0.1
831,757 - CSW01_04025 0.55 -1.0
831,815 + CSW01_04025 0.61 -1.9
831,823 - CSW01_04025 0.62 +0.3
831,851 + CSW01_04025 0.65 -0.6
831,876 + CSW01_04025 0.67 -0.1
831,886 + CSW01_04025 0.68 -0.1
831,948 + CSW01_04025 0.75 -1.1
832,058 + CSW01_04025 0.86 -4.4
832,106 + -1.5
832,111 + +1.1
832,113 + -2.6
832,114 - -0.3
832,215 - +0.2
832,436 - CSW01_04030 0.23 +0.0
832,454 + CSW01_04030 0.25 +0.3
832,498 - CSW01_04030 0.29 +1.8
832,537 - CSW01_04030 0.33 +0.7
832,559 - CSW01_04030 0.35 -2.8
832,566 + CSW01_04030 0.36 -2.4
832,602 - CSW01_04030 0.39 +0.4
832,602 - CSW01_04030 0.39 -2.7
832,605 + CSW01_04030 0.39 -2.2
832,628 - CSW01_04030 0.42 -0.5
832,661 - CSW01_04030 0.45 +0.8
832,667 + CSW01_04030 0.45 +1.9
832,686 + CSW01_04030 0.47 +1.1
832,686 + CSW01_04030 0.47 +0.1
832,694 - CSW01_04030 0.48 -3.2
832,694 - CSW01_04030 0.48 -0.4
832,818 - CSW01_04030 0.60 +1.3
832,886 + CSW01_04030 0.66 -3.5
832,911 - CSW01_04030 0.68 +1.3
832,928 - CSW01_04030 0.70 +0.7
832,943 + CSW01_04030 0.71 +1.8
832,943 + CSW01_04030 0.71 +1.8
832,951 - CSW01_04030 0.72 -2.3
832,951 - CSW01_04030 0.72 +1.7
832,974 + CSW01_04030 0.74 +0.8
832,993 - CSW01_04030 0.76 +1.2
833,059 + CSW01_04030 0.82 -0.7
833,059 + CSW01_04030 0.82 -0.7
833,059 + CSW01_04030 0.82 +0.7
833,067 - CSW01_04030 0.83 -0.6
833,081 + CSW01_04030 0.85 +0.8
833,086 + CSW01_04030 0.85 -1.9
833,086 + CSW01_04030 0.85 -0.7
833,089 - CSW01_04030 0.85 -0.8
833,089 - CSW01_04030 0.85 +1.5
833,096 + CSW01_04030 0.86 +0.7
833,172 - -2.6
833,218 - -0.4
833,221 + -0.9
833,261 + -0.2
833,307 + +1.4
833,315 - -1.7
833,317 + -1.1
833,317 + +0.6
833,346 + CSW01_04035 0.12 +0.4
833,354 - CSW01_04035 0.12 +1.0
833,372 + CSW01_04035 0.14 +0.3
833,462 + CSW01_04035 0.22 +0.9
833,524 - CSW01_04035 0.28 -1.8
833,524 - CSW01_04035 0.28 -2.6
833,524 - CSW01_04035 0.28 +0.8
833,553 + CSW01_04035 0.31 -0.6
833,553 + CSW01_04035 0.31 +0.6
833,578 + CSW01_04035 0.33 +0.4
833,600 - CSW01_04035 0.35 +0.0
833,615 - CSW01_04035 0.36 +1.0
833,718 + CSW01_04035 0.46 -3.3
833,750 - CSW01_04035 0.49 +1.2
833,769 + CSW01_04035 0.51 -1.1
833,769 + CSW01_04035 0.51 +1.4
833,785 + CSW01_04035 0.52 +0.9
833,813 + CSW01_04035 0.55 -2.6
833,821 - CSW01_04035 0.56 +0.9
833,821 - CSW01_04035 0.56 +1.3
833,858 + CSW01_04035 0.59 -1.1
833,943 + CSW01_04035 0.67 +0.2
833,951 - CSW01_04035 0.68 +0.5
834,101 - CSW01_04035 0.82 +0.2
834,139 + CSW01_04035 0.85 -0.3
834,144 + CSW01_04035 0.86 -0.3
834,144 + CSW01_04035 0.86 -0.0
834,157 - CSW01_04035 0.87 +0.8
834,162 - CSW01_04035 0.87 -1.1
834,180 - CSW01_04035 0.89 +0.5
834,180 - CSW01_04035 0.89 -0.3
834,180 - CSW01_04035 0.89 -1.3
834,185 - CSW01_04035 0.89 -0.8
834,203 + -0.5
834,210 + +0.0
834,210 + +0.5
834,210 + +0.0
834,210 + -2.4
834,210 + -3.3
834,218 - +0.0
834,218 - -0.1
834,218 - -0.6
834,218 - +0.7

Or see this region's nucleotide sequence