Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03930 and CSW01_03935 are separated by 313 nucleotides CSW01_03935 and CSW01_03940 are separated by 4 nucleotides
CSW01_03930: CSW01_03930 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 807,313 to 808,434
_03930
CSW01_03935: CSW01_03935 - cytoskeleton protein RodZ, at 808,748 to 809,830
_03935
CSW01_03940: CSW01_03940 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 809,835 to 810,965
_03940
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 807.748 kb on + strand, within CSW01_03930 at 807.807 kb on + strand, within CSW01_03930 at 807.808 kb on + strand, within CSW01_03930 at 807.821 kb on - strand, within CSW01_03930 at 808.150 kb on - strand, within CSW01_03930 at 808.217 kb on - strand, within CSW01_03930 at 808.217 kb on - strand, within CSW01_03930 at 808.305 kb on - strand, within CSW01_03930 at 808.350 kb on + strand at 808.361 kb on - strand at 808.633 kb on + strand at 808.656 kb on + strand at 808.716 kb on + strand at 809.210 kb on - strand, within CSW01_03935 at 809.210 kb on - strand, within CSW01_03935 at 809.278 kb on - strand, within CSW01_03935 at 809.327 kb on + strand, within CSW01_03935 at 809.484 kb on - strand, within CSW01_03935 at 809.490 kb on + strand, within CSW01_03935 at 809.530 kb on + strand, within CSW01_03935 at 809.538 kb on - strand, within CSW01_03935 at 809.567 kb on + strand, within CSW01_03935 at 809.567 kb on + strand, within CSW01_03935 at 809.577 kb on + strand, within CSW01_03935 at 809.654 kb on + strand, within CSW01_03935 at 809.665 kb on + strand, within CSW01_03935 at 809.673 kb on - strand, within CSW01_03935 at 809.673 kb on - strand, within CSW01_03935 at 809.736 kb on - strand at 809.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 807,748 + CSW01_03930 0.39 -1.5 807,807 + CSW01_03930 0.44 +0.6 807,808 + CSW01_03930 0.44 +1.4 807,821 - CSW01_03930 0.45 +1.1 808,150 - CSW01_03930 0.75 +0.6 808,217 - CSW01_03930 0.81 +0.3 808,217 - CSW01_03930 0.81 +0.9 808,305 - CSW01_03930 0.88 -1.8 808,350 + +1.3 808,361 - -0.4 808,633 + +1.8 808,656 + +1.2 808,716 + -2.3 809,210 - CSW01_03935 0.43 -1.4 809,210 - CSW01_03935 0.43 -1.7 809,278 - CSW01_03935 0.49 -2.0 809,327 + CSW01_03935 0.53 -0.2 809,484 - CSW01_03935 0.68 -2.5 809,490 + CSW01_03935 0.69 -3.1 809,530 + CSW01_03935 0.72 -2.5 809,538 - CSW01_03935 0.73 -0.6 809,567 + CSW01_03935 0.76 +0.3 809,567 + CSW01_03935 0.76 -0.5 809,577 + CSW01_03935 0.77 +0.4 809,654 + CSW01_03935 0.84 +0.3 809,665 + CSW01_03935 0.85 -2.7 809,673 - CSW01_03935 0.85 -0.9 809,673 - CSW01_03935 0.85 +0.1 809,736 - -2.9 809,749 - +0.1
Or see this region's nucleotide sequence