Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03835

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03830 and CSW01_03835 are separated by 152 nucleotidesCSW01_03835 and CSW01_03840 are separated by 229 nucleotides CSW01_03830: CSW01_03830 - isocitrate lyase, at 789,495 to 790,808 _03830 CSW01_03835: CSW01_03835 - acetoin utilization protein AcuB, at 790,961 to 791,470 _03835 CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758 _03840 Position (kb) 790 791 792Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 789.995 kb on + strand, within CSW01_03830at 790.047 kb on - strand, within CSW01_03830at 790.059 kb on + strand, within CSW01_03830at 790.060 kb on - strand, within CSW01_03830at 790.113 kb on - strand, within CSW01_03830at 790.281 kb on + strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.302 kb on + strand, within CSW01_03830at 790.348 kb on - strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.369 kb on - strand, within CSW01_03830at 790.426 kb on + strand, within CSW01_03830at 790.439 kb on - strand, within CSW01_03830at 790.443 kb on + strand, within CSW01_03830at 790.443 kb on + strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.544 kb on + strand, within CSW01_03830at 790.594 kb on - strand, within CSW01_03830at 790.601 kb on + strand, within CSW01_03830at 790.601 kb on + strand, within CSW01_03830at 790.613 kb on + strand, within CSW01_03830at 790.647 kb on - strand, within CSW01_03830at 790.677 kb on + strandat 790.677 kb on + strandat 790.677 kb on + strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.715 kb on + strandat 790.733 kb on + strandat 790.741 kb on - strandat 790.743 kb on + strandat 790.778 kb on - strandat 790.817 kb on + strandat 790.878 kb on - strandat 790.884 kb on + strandat 790.892 kb on - strandat 790.975 kb on - strandat 791.158 kb on + strand, within CSW01_03835at 791.163 kb on + strand, within CSW01_03835at 791.172 kb on + strand, within CSW01_03835at 791.180 kb on - strand, within CSW01_03835at 791.182 kb on + strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.222 kb on - strand, within CSW01_03835at 791.292 kb on + strand, within CSW01_03835at 791.326 kb on + strand, within CSW01_03835at 791.370 kb on - strand, within CSW01_03835at 791.400 kb on + strand, within CSW01_03835at 791.408 kb on - strand, within CSW01_03835at 791.411 kb on + strand, within CSW01_03835at 791.424 kb on - strandat 791.424 kb on - strandat 791.496 kb on - strandat 791.543 kb on + strandat 791.561 kb on + strandat 791.569 kb on - strandat 791.597 kb on + strandat 791.597 kb on - strandat 791.605 kb on - strandat 791.612 kb on + strandat 791.632 kb on + strandat 791.638 kb on + strandat 791.638 kb on + strandat 791.640 kb on - strandat 791.646 kb on - strandat 791.646 kb on - strandat 791.690 kb on + strandat 791.868 kb on + strand, within CSW01_03840at 791.878 kb on + strand, within CSW01_03840at 791.989 kb on + strand, within CSW01_03840at 792.036 kb on + strand, within CSW01_03840at 792.062 kb on - strand, within CSW01_03840at 792.071 kb on - strand, within CSW01_03840at 792.201 kb on + strand, within CSW01_03840at 792.201 kb on - strand, within CSW01_03840at 792.209 kb on - strand, within CSW01_03840at 792.289 kb on - strand, within CSW01_03840at 792.296 kb on - strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.340 kb on - strand, within CSW01_03840at 792.459 kb on + strand, within CSW01_03840at 792.466 kb on - strand, within CSW01_03840at 792.467 kb on - strand, within CSW01_03840

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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789,995 + CSW01_03830 0.38 +1.3
790,047 - CSW01_03830 0.42 -2.0
790,059 + CSW01_03830 0.43 -1.7
790,060 - CSW01_03830 0.43 -1.4
790,113 - CSW01_03830 0.47 -0.3
790,281 + CSW01_03830 0.60 -0.1
790,289 - CSW01_03830 0.60 -0.5
790,289 - CSW01_03830 0.60 -3.9
790,289 - CSW01_03830 0.60 +1.4
790,302 + CSW01_03830 0.61 +0.7
790,348 - CSW01_03830 0.65 -3.0
790,350 + CSW01_03830 0.65 +1.5
790,350 + CSW01_03830 0.65 -0.8
790,350 + CSW01_03830 0.65 +1.3
790,350 + CSW01_03830 0.65 +1.3
790,358 - CSW01_03830 0.66 -0.1
790,358 - CSW01_03830 0.66 -3.9
790,358 - CSW01_03830 0.66 +0.0
790,358 - CSW01_03830 0.66 -1.6
790,358 - CSW01_03830 0.66 +1.8
790,369 - CSW01_03830 0.67 -2.4
790,426 + CSW01_03830 0.71 -0.0
790,439 - CSW01_03830 0.72 +0.7
790,443 + CSW01_03830 0.72 +0.6
790,443 + CSW01_03830 0.72 +0.3
790,451 - CSW01_03830 0.73 -0.7
790,451 - CSW01_03830 0.73 +0.4
790,451 - CSW01_03830 0.73 +2.3
790,544 + CSW01_03830 0.80 -0.4
790,594 - CSW01_03830 0.84 +0.1
790,601 + CSW01_03830 0.84 -0.4
790,601 + CSW01_03830 0.84 -2.7
790,613 + CSW01_03830 0.85 -2.5
790,647 - CSW01_03830 0.88 -0.5
790,677 + +0.3
790,677 + +0.1
790,677 + +0.2
790,685 - -4.1
790,685 - +0.8
790,685 - -2.5
790,685 - -3.1
790,685 - -0.8
790,715 + -0.5
790,733 + +0.8
790,741 - -1.1
790,743 + -0.8
790,778 - -1.1
790,817 + -0.7
790,878 - -4.1
790,884 + -0.3
790,892 - -1.3
790,975 - +0.7
791,158 + CSW01_03835 0.39 +0.3
791,163 + CSW01_03835 0.40 +1.0
791,172 + CSW01_03835 0.41 +0.5
791,180 - CSW01_03835 0.43 -1.5
791,182 + CSW01_03835 0.43 +0.3
791,215 - CSW01_03835 0.50 +0.1
791,215 - CSW01_03835 0.50 -1.0
791,222 - CSW01_03835 0.51 -0.0
791,292 + CSW01_03835 0.65 +0.5
791,326 + CSW01_03835 0.72 -3.0
791,370 - CSW01_03835 0.80 +1.6
791,400 + CSW01_03835 0.86 +1.4
791,408 - CSW01_03835 0.88 +2.1
791,411 + CSW01_03835 0.88 +0.2
791,424 - -0.2
791,424 - -0.0
791,496 - +0.2
791,543 + -0.5
791,561 + +0.9
791,569 - -4.4
791,597 + +0.3
791,597 - -0.3
791,605 - +1.1
791,612 + -4.0
791,632 + -1.0
791,638 + +1.0
791,638 + +1.2
791,640 - -1.1
791,646 - -0.4
791,646 - +0.6
791,690 + -1.7
791,868 + CSW01_03840 0.16 -2.4
791,878 + CSW01_03840 0.17 -0.1
791,989 + CSW01_03840 0.27 +0.1
792,036 + CSW01_03840 0.32 -0.9
792,062 - CSW01_03840 0.34 -2.4
792,071 - CSW01_03840 0.35 +0.4
792,201 + CSW01_03840 0.47 -1.2
792,201 - CSW01_03840 0.47 +1.0
792,209 - CSW01_03840 0.48 +0.6
792,289 - CSW01_03840 0.56 +0.1
792,296 - CSW01_03840 0.56 -1.9
792,304 + CSW01_03840 0.57 -1.1
792,304 + CSW01_03840 0.57 +0.4
792,304 + CSW01_03840 0.57 -2.3
792,312 - CSW01_03840 0.58 -0.3
792,312 - CSW01_03840 0.58 +0.9
792,312 - CSW01_03840 0.58 -3.2
792,312 - CSW01_03840 0.58 +1.3
792,331 + CSW01_03840 0.60 +0.5
792,331 + CSW01_03840 0.60 -1.2
792,332 + CSW01_03840 0.60 -0.8
792,332 + CSW01_03840 0.60 +1.9
792,340 - CSW01_03840 0.60 -1.4
792,459 + CSW01_03840 0.72 -1.5
792,466 - CSW01_03840 0.72 -1.0
792,467 - CSW01_03840 0.72 +0.4

Or see this region's nucleotide sequence