Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03775

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03770 and CSW01_03775 are separated by 67 nucleotidesCSW01_03775 and CSW01_03780 overlap by 89 nucleotides CSW01_03770: CSW01_03770 - phosphate ABC transporter substrate-binding protein, at 773,022 to 773,999 _03770 CSW01_03775: CSW01_03775 - exopolyphosphatase, at 774,067 to 775,638 _03775 CSW01_03780: CSW01_03780 - polyphosphate kinase 1, at 775,550 to 777,655 _03780 Position (kb) 774 775 776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 773.138 kb on - strand, within CSW01_03770at 773.184 kb on - strand, within CSW01_03770at 773.212 kb on + strand, within CSW01_03770at 773.215 kb on - strand, within CSW01_03770at 773.232 kb on + strand, within CSW01_03770at 773.240 kb on - strand, within CSW01_03770at 773.287 kb on + strand, within CSW01_03770at 773.340 kb on - strand, within CSW01_03770at 773.365 kb on - strand, within CSW01_03770at 773.464 kb on + strand, within CSW01_03770at 773.471 kb on - strand, within CSW01_03770at 773.473 kb on + strand, within CSW01_03770at 773.516 kb on + strand, within CSW01_03770at 773.525 kb on - strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.611 kb on - strand, within CSW01_03770at 773.695 kb on + strand, within CSW01_03770at 773.707 kb on + strand, within CSW01_03770at 773.761 kb on + strand, within CSW01_03770at 773.797 kb on - strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.823 kb on - strand, within CSW01_03770at 773.909 kb on - strandat 773.914 kb on - strandat 773.963 kb on - strandat 774.021 kb on + strandat 774.045 kb on + strandat 774.055 kb on + strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.202 kb on + strandat 774.202 kb on + strandat 774.268 kb on + strand, within CSW01_03775at 774.300 kb on + strand, within CSW01_03775at 774.361 kb on + strand, within CSW01_03775at 774.382 kb on + strand, within CSW01_03775at 774.390 kb on - strand, within CSW01_03775at 774.390 kb on - strand, within CSW01_03775at 774.444 kb on + strand, within CSW01_03775at 774.456 kb on + strand, within CSW01_03775at 774.456 kb on + strand, within CSW01_03775at 774.459 kb on - strand, within CSW01_03775at 774.464 kb on + strand, within CSW01_03775at 774.464 kb on - strand, within CSW01_03775at 774.464 kb on - strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.509 kb on - strand, within CSW01_03775at 774.556 kb on + strand, within CSW01_03775at 774.564 kb on - strand, within CSW01_03775at 774.570 kb on - strand, within CSW01_03775at 774.582 kb on + strand, within CSW01_03775at 774.605 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.791 kb on - strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.862 kb on + strand, within CSW01_03775at 774.997 kb on + strand, within CSW01_03775at 775.072 kb on + strand, within CSW01_03775at 775.085 kb on + strand, within CSW01_03775at 775.087 kb on + strand, within CSW01_03775at 775.095 kb on + strand, within CSW01_03775at 775.098 kb on - strand, within CSW01_03775at 775.103 kb on - strand, within CSW01_03775at 775.174 kb on + strand, within CSW01_03775at 775.182 kb on - strand, within CSW01_03775at 775.187 kb on - strand, within CSW01_03775at 775.246 kb on + strand, within CSW01_03775at 775.286 kb on + strand, within CSW01_03775at 775.302 kb on + strand, within CSW01_03775at 775.310 kb on - strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.375 kb on + strand, within CSW01_03775at 775.375 kb on + strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.520 kb on + strandat 775.767 kb on - strand, within CSW01_03780at 775.809 kb on + strand, within CSW01_03780at 775.824 kb on - strand, within CSW01_03780at 775.838 kb on + strand, within CSW01_03780at 775.852 kb on - strand, within CSW01_03780at 775.854 kb on - strand, within CSW01_03780at 775.901 kb on + strand, within CSW01_03780at 775.903 kb on + strand, within CSW01_03780at 775.911 kb on - strand, within CSW01_03780at 775.911 kb on - strand, within CSW01_03780at 775.956 kb on + strand, within CSW01_03780at 775.985 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.083 kb on + strand, within CSW01_03780at 776.177 kb on + strand, within CSW01_03780at 776.248 kb on - strand, within CSW01_03780at 776.264 kb on - strand, within CSW01_03780at 776.277 kb on - strand, within CSW01_03780at 776.277 kb on - strand, within CSW01_03780at 776.355 kb on + strand, within CSW01_03780at 776.357 kb on - strand, within CSW01_03780at 776.423 kb on + strand, within CSW01_03780at 776.427 kb on + strand, within CSW01_03780at 776.427 kb on + strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.504 kb on - strand, within CSW01_03780at 776.525 kb on + strand, within CSW01_03780at 776.609 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.620 kb on + strand, within CSW01_03780at 776.625 kb on + strand, within CSW01_03780at 776.628 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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773,138 - CSW01_03770 0.12 -0.3
773,184 - CSW01_03770 0.17 -0.8
773,212 + CSW01_03770 0.19 -1.0
773,215 - CSW01_03770 0.20 -1.2
773,232 + CSW01_03770 0.21 -0.1
773,240 - CSW01_03770 0.22 +0.9
773,287 + CSW01_03770 0.27 -0.1
773,340 - CSW01_03770 0.33 +0.3
773,365 - CSW01_03770 0.35 -0.5
773,464 + CSW01_03770 0.45 +0.3
773,471 - CSW01_03770 0.46 -0.6
773,473 + CSW01_03770 0.46 +0.3
773,516 + CSW01_03770 0.51 -4.0
773,525 - CSW01_03770 0.51 +0.4
773,603 + CSW01_03770 0.59 +0.2
773,603 + CSW01_03770 0.59 -1.0
773,603 + CSW01_03770 0.59 -1.0
773,611 - CSW01_03770 0.60 +0.2
773,695 + CSW01_03770 0.69 -3.9
773,707 + CSW01_03770 0.70 +1.5
773,761 + CSW01_03770 0.76 -3.0
773,797 - CSW01_03770 0.79 -3.0
773,815 + CSW01_03770 0.81 -2.5
773,815 + CSW01_03770 0.81 +1.1
773,823 - CSW01_03770 0.82 +0.1
773,909 - -0.0
773,914 - +0.2
773,963 - -0.8
774,021 + +0.6
774,045 + -2.4
774,055 + -2.9
774,121 - -2.1
774,121 - +0.8
774,121 - -1.1
774,121 - +0.7
774,121 - -0.8
774,202 + -2.9
774,202 + +2.0
774,268 + CSW01_03775 0.13 -1.0
774,300 + CSW01_03775 0.15 +1.4
774,361 + CSW01_03775 0.19 -2.5
774,382 + CSW01_03775 0.20 -0.3
774,390 - CSW01_03775 0.21 -3.6
774,390 - CSW01_03775 0.21 +0.5
774,444 + CSW01_03775 0.24 +0.8
774,456 + CSW01_03775 0.25 -1.7
774,456 + CSW01_03775 0.25 +0.4
774,459 - CSW01_03775 0.25 +0.0
774,464 + CSW01_03775 0.25 +0.8
774,464 - CSW01_03775 0.25 -0.6
774,464 - CSW01_03775 0.25 -0.1
774,501 + CSW01_03775 0.28 +0.2
774,501 + CSW01_03775 0.28 +0.6
774,501 + CSW01_03775 0.28 +0.5
774,501 + CSW01_03775 0.28 +2.3
774,509 - CSW01_03775 0.28 -2.8
774,556 + CSW01_03775 0.31 +0.9
774,564 - CSW01_03775 0.32 -0.1
774,570 - CSW01_03775 0.32 -3.2
774,582 + CSW01_03775 0.33 +0.4
774,605 - CSW01_03775 0.34 -1.5
774,678 - CSW01_03775 0.39 +0.4
774,678 - CSW01_03775 0.39 -0.1
774,678 - CSW01_03775 0.39 -0.1
774,791 - CSW01_03775 0.46 -1.1
774,807 + CSW01_03775 0.47 -0.2
774,807 + CSW01_03775 0.47 -0.6
774,855 + CSW01_03775 0.50 +1.4
774,855 + CSW01_03775 0.50 -0.5
774,862 + CSW01_03775 0.51 +0.2
774,997 + CSW01_03775 0.59 -1.1
775,072 + CSW01_03775 0.64 -0.5
775,085 + CSW01_03775 0.65 -3.3
775,087 + CSW01_03775 0.65 +0.4
775,095 + CSW01_03775 0.65 +2.2
775,098 - CSW01_03775 0.66 +1.6
775,103 - CSW01_03775 0.66 +0.4
775,174 + CSW01_03775 0.70 -0.4
775,182 - CSW01_03775 0.71 -1.2
775,187 - CSW01_03775 0.71 +1.5
775,246 + CSW01_03775 0.75 +0.7
775,286 + CSW01_03775 0.78 -1.4
775,302 + CSW01_03775 0.79 +2.3
775,310 - CSW01_03775 0.79 +0.5
775,335 + CSW01_03775 0.81 -1.5
775,335 + CSW01_03775 0.81 +0.1
775,335 + CSW01_03775 0.81 -2.3
775,343 - CSW01_03775 0.81 +0.2
775,343 - CSW01_03775 0.81 +0.5
775,343 - CSW01_03775 0.81 +0.5
775,343 - CSW01_03775 0.81 -2.2
775,375 + CSW01_03775 0.83 +0.5
775,375 + CSW01_03775 0.83 +0.8
775,383 - CSW01_03775 0.84 -2.3
775,383 - CSW01_03775 0.84 +0.2
775,383 - CSW01_03775 0.84 +1.2
775,520 + -0.9
775,767 - CSW01_03780 0.10 -0.3
775,809 + CSW01_03780 0.12 -1.8
775,824 - CSW01_03780 0.13 -0.3
775,838 + CSW01_03780 0.14 +1.2
775,852 - CSW01_03780 0.14 +0.2
775,854 - CSW01_03780 0.14 +1.6
775,901 + CSW01_03780 0.17 +0.2
775,903 + CSW01_03780 0.17 +0.4
775,911 - CSW01_03780 0.17 +0.9
775,911 - CSW01_03780 0.17 +1.5
775,956 + CSW01_03780 0.19 -0.4
775,985 + CSW01_03780 0.21 -0.6
776,053 + CSW01_03780 0.24 +0.4
776,053 + CSW01_03780 0.24 +0.7
776,053 + CSW01_03780 0.24 +0.7
776,053 + CSW01_03780 0.24 -0.1
776,053 + CSW01_03780 0.24 +2.1
776,053 + CSW01_03780 0.24 -1.1
776,061 - CSW01_03780 0.24 -2.3
776,061 - CSW01_03780 0.24 +0.9
776,061 - CSW01_03780 0.24 -2.6
776,061 - CSW01_03780 0.24 -1.6
776,083 + CSW01_03780 0.25 -0.6
776,177 + CSW01_03780 0.30 -2.4
776,248 - CSW01_03780 0.33 +1.2
776,264 - CSW01_03780 0.34 -2.8
776,277 - CSW01_03780 0.35 -2.8
776,277 - CSW01_03780 0.35 +0.9
776,355 + CSW01_03780 0.38 +0.2
776,357 - CSW01_03780 0.38 -0.2
776,423 + CSW01_03780 0.41 -3.0
776,427 + CSW01_03780 0.42 -0.2
776,427 + CSW01_03780 0.42 -0.5
776,435 - CSW01_03780 0.42 +1.4
776,435 - CSW01_03780 0.42 -0.3
776,435 - CSW01_03780 0.42 -2.2
776,435 - CSW01_03780 0.42 -0.4
776,435 - CSW01_03780 0.42 +0.3
776,504 - CSW01_03780 0.45 +0.2
776,525 + CSW01_03780 0.46 -1.8
776,609 - CSW01_03780 0.50 +0.2
776,616 - CSW01_03780 0.51 +0.4
776,616 - CSW01_03780 0.51 -1.0
776,616 - CSW01_03780 0.51 +0.9
776,620 + CSW01_03780 0.51 +1.2
776,625 + CSW01_03780 0.51 +1.9
776,628 - CSW01_03780 0.51 +0.1
776,633 - CSW01_03780 0.51 -1.0
776,633 - CSW01_03780 0.51 -0.6
776,633 - CSW01_03780 0.51 -2.5
776,633 - CSW01_03780 0.51 -1.9
776,633 - CSW01_03780 0.51 -4.0

Or see this region's nucleotide sequence