Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03555 and CSW01_03560 are separated by 68 nucleotides CSW01_03560 and CSW01_03565 are separated by 242 nucleotides CSW01_03565 and CSW01_03570 are separated by 68 nucleotides
CSW01_03555: CSW01_03555 - transcriptional regulator, at 723,888 to 724,214
_03555
CSW01_03560: CSW01_03560 - 30S ribosomal protein S20, at 724,283 to 724,543
_03560
CSW01_03565: CSW01_03565 - lipid II flippase MurJ, at 724,786 to 726,363
_03565
CSW01_03570: CSW01_03570 - bifunctional riboflavin kinase/FMN adenylyltransferase, at 726,432 to 727,400
_03570
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 724.055 kb on + strand, within CSW01_03555 at 724.136 kb on + strand, within CSW01_03555 at 724.151 kb on - strand, within CSW01_03555 at 724.153 kb on + strand, within CSW01_03555 at 724.153 kb on + strand, within CSW01_03555 at 724.153 kb on + strand, within CSW01_03555 at 724.153 kb on + strand, within CSW01_03555 at 724.161 kb on - strand, within CSW01_03555 at 724.161 kb on - strand, within CSW01_03555 at 724.161 kb on - strand, within CSW01_03555 at 724.717 kb on + strand at 724.735 kb on - strand at 724.747 kb on + strand at 724.801 kb on - strand at 726.373 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 724,055 + CSW01_03555 0.51 -0.4 724,136 + CSW01_03555 0.76 +0.5 724,151 - CSW01_03555 0.80 -4.6 724,153 + CSW01_03555 0.81 +0.2 724,153 + CSW01_03555 0.81 +0.8 724,153 + CSW01_03555 0.81 +0.4 724,153 + CSW01_03555 0.81 -0.5 724,161 - CSW01_03555 0.83 -2.1 724,161 - CSW01_03555 0.83 +1.6 724,161 - CSW01_03555 0.83 -1.2 724,717 + -4.3 724,735 - -0.7 724,747 + -0.5 724,801 - -1.0 726,373 + -0.2 727,355 + -1.0 727,355 + -3.0
Or see this region's nucleotide sequence