Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03030

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03020 and CSW01_03025 are separated by 128 nucleotidesCSW01_03025 and CSW01_03030 are separated by 153 nucleotidesCSW01_03030 and CSW01_03035 are separated by 223 nucleotidesCSW01_03035 and CSW01_03040 are separated by 15 nucleotides CSW01_03020: CSW01_03020 - serine endoprotease DegQ, at 598,379 to 599,749 _03020 CSW01_03025: CSW01_03025 - hypothetical protein, at 599,878 to 600,315 _03025 CSW01_03030: CSW01_03030 - cell division protein ZapE, at 600,469 to 601,572 _03030 CSW01_03035: CSW01_03035 - 50S ribosomal protein L13, at 601,796 to 602,224 _03035 CSW01_03040: CSW01_03040 - 30S ribosomal protein S9, at 602,240 to 602,632 _03040 Position (kb) 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 599.472 kb on - strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.586 kb on + strand, within CSW01_03020at 599.641 kb on + strandat 599.719 kb on - strandat 599.884 kb on + strandat 599.951 kb on - strand, within CSW01_03025at 600.035 kb on + strand, within CSW01_03025at 600.107 kb on - strand, within CSW01_03025at 600.162 kb on + strand, within CSW01_03025at 600.177 kb on + strand, within CSW01_03025at 600.180 kb on - strand, within CSW01_03025at 600.185 kb on - strand, within CSW01_03025at 600.242 kb on - strand, within CSW01_03025at 600.310 kb on + strandat 600.310 kb on + strandat 600.529 kb on + strandat 600.666 kb on - strand, within CSW01_03030at 600.673 kb on - strand, within CSW01_03030at 600.675 kb on - strand, within CSW01_03030at 600.691 kb on - strand, within CSW01_03030at 600.701 kb on - strand, within CSW01_03030at 600.912 kb on + strand, within CSW01_03030at 600.912 kb on + strand, within CSW01_03030at 600.920 kb on - strand, within CSW01_03030at 600.924 kb on + strand, within CSW01_03030at 600.949 kb on + strand, within CSW01_03030at 600.955 kb on - strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.081 kb on - strand, within CSW01_03030at 601.097 kb on + strand, within CSW01_03030at 601.126 kb on + strand, within CSW01_03030at 601.126 kb on + strand, within CSW01_03030at 601.152 kb on + strand, within CSW01_03030at 601.158 kb on + strand, within CSW01_03030at 601.158 kb on + strand, within CSW01_03030at 601.163 kb on + strand, within CSW01_03030at 601.166 kb on - strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.184 kb on - strand, within CSW01_03030at 601.186 kb on + strand, within CSW01_03030at 601.186 kb on + strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.310 kb on + strand, within CSW01_03030at 601.453 kb on + strand, within CSW01_03030at 601.589 kb on + strandat 601.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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599,472 - CSW01_03020 0.80 -1.1
599,583 + CSW01_03020 0.88 -2.7
599,583 + CSW01_03020 0.88 +0.1
599,586 + CSW01_03020 0.88 +0.1
599,641 + +0.4
599,719 - -2.4
599,884 + -0.4
599,951 - CSW01_03025 0.17 -0.2
600,035 + CSW01_03025 0.36 -0.8
600,107 - CSW01_03025 0.52 +1.7
600,162 + CSW01_03025 0.65 +2.0
600,177 + CSW01_03025 0.68 +0.7
600,180 - CSW01_03025 0.69 -2.3
600,185 - CSW01_03025 0.70 +1.4
600,242 - CSW01_03025 0.83 +1.3
600,310 + +1.1
600,310 + -2.7
600,529 + +0.5
600,666 - CSW01_03030 0.18 -2.0
600,673 - CSW01_03030 0.18 -0.7
600,675 - CSW01_03030 0.19 +0.8
600,691 - CSW01_03030 0.20 +1.6
600,701 - CSW01_03030 0.21 -0.2
600,912 + CSW01_03030 0.40 -0.4
600,912 + CSW01_03030 0.40 -0.9
600,920 - CSW01_03030 0.41 +1.4
600,924 + CSW01_03030 0.41 -0.4
600,949 + CSW01_03030 0.43 +0.4
600,955 - CSW01_03030 0.44 -1.6
601,000 + CSW01_03030 0.48 +0.3
601,000 + CSW01_03030 0.48 -1.0
601,000 + CSW01_03030 0.48 -0.2
601,008 - CSW01_03030 0.49 +0.2
601,008 - CSW01_03030 0.49 -0.1
601,008 - CSW01_03030 0.49 -2.2
601,081 - CSW01_03030 0.55 -2.9
601,097 + CSW01_03030 0.57 -3.3
601,126 + CSW01_03030 0.60 -2.6
601,126 + CSW01_03030 0.60 +1.9
601,152 + CSW01_03030 0.62 +0.2
601,158 + CSW01_03030 0.62 -2.1
601,158 + CSW01_03030 0.62 -0.2
601,163 + CSW01_03030 0.63 +1.0
601,166 - CSW01_03030 0.63 -0.1
601,181 + CSW01_03030 0.64 -2.8
601,181 + CSW01_03030 0.64 -1.4
601,181 + CSW01_03030 0.64 -2.5
601,181 + CSW01_03030 0.64 -4.2
601,181 + CSW01_03030 0.64 +0.5
601,181 + CSW01_03030 0.64 -2.2
601,181 + CSW01_03030 0.64 -1.2
601,181 + CSW01_03030 0.64 +2.0
601,181 + CSW01_03030 0.64 -4.0
601,181 + CSW01_03030 0.64 -2.6
601,184 - CSW01_03030 0.65 -0.7
601,186 + CSW01_03030 0.65 +1.5
601,186 + CSW01_03030 0.65 -0.9
601,189 - CSW01_03030 0.65 +2.8
601,189 - CSW01_03030 0.65 +1.0
601,189 - CSW01_03030 0.65 -3.2
601,189 - CSW01_03030 0.65 -3.4
601,189 - CSW01_03030 0.65 -1.3
601,189 - CSW01_03030 0.65 -1.9
601,189 - CSW01_03030 0.65 -3.5
601,189 - CSW01_03030 0.65 +0.2
601,310 + CSW01_03030 0.76 -1.5
601,453 + CSW01_03030 0.89 -2.0
601,589 + -0.2
601,597 - +0.6

Or see this region's nucleotide sequence