Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03020

Experiment: ICP3_phage_4.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03015 and CSW01_03020 are separated by 176 nucleotidesCSW01_03020 and CSW01_03025 are separated by 128 nucleotidesCSW01_03025 and CSW01_03030 are separated by 153 nucleotides CSW01_03015: CSW01_03015 - outer membrane-stress sensor serine endopeptidase DegS, at 597,144 to 598,202 _03015 CSW01_03020: CSW01_03020 - serine endoprotease DegQ, at 598,379 to 599,749 _03020 CSW01_03025: CSW01_03025 - hypothetical protein, at 599,878 to 600,315 _03025 CSW01_03030: CSW01_03030 - cell division protein ZapE, at 600,469 to 601,572 _03030 Position (kb) 598 599 600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 598.251 kb on + strandat 598.259 kb on - strandat 598.259 kb on - strandat 598.259 kb on - strandat 598.360 kb on + strandat 598.360 kb on + strandat 598.406 kb on + strandat 598.414 kb on - strandat 598.414 kb on - strandat 598.494 kb on - strandat 598.568 kb on - strand, within CSW01_03020at 598.574 kb on + strand, within CSW01_03020at 598.575 kb on - strand, within CSW01_03020at 598.582 kb on - strand, within CSW01_03020at 598.592 kb on - strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.619 kb on + strand, within CSW01_03020at 598.714 kb on + strand, within CSW01_03020at 598.722 kb on - strand, within CSW01_03020at 598.765 kb on + strand, within CSW01_03020at 598.773 kb on - strand, within CSW01_03020at 598.773 kb on - strand, within CSW01_03020at 599.012 kb on + strand, within CSW01_03020at 599.030 kb on - strand, within CSW01_03020at 599.079 kb on + strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.240 kb on - strand, within CSW01_03020at 599.271 kb on - strand, within CSW01_03020at 599.271 kb on - strand, within CSW01_03020at 599.378 kb on + strand, within CSW01_03020at 599.409 kb on + strand, within CSW01_03020at 599.441 kb on + strand, within CSW01_03020at 599.443 kb on - strand, within CSW01_03020at 599.443 kb on - strand, within CSW01_03020at 599.454 kb on + strand, within CSW01_03020at 599.472 kb on - strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.586 kb on + strand, within CSW01_03020at 599.641 kb on + strandat 599.719 kb on - strandat 599.884 kb on + strandat 599.951 kb on - strand, within CSW01_03025at 600.035 kb on + strand, within CSW01_03025at 600.107 kb on - strand, within CSW01_03025at 600.162 kb on + strand, within CSW01_03025at 600.177 kb on + strand, within CSW01_03025at 600.180 kb on - strand, within CSW01_03025at 600.185 kb on - strand, within CSW01_03025at 600.242 kb on - strand, within CSW01_03025at 600.310 kb on + strandat 600.310 kb on + strandat 600.529 kb on + strandat 600.666 kb on - strand, within CSW01_03030at 600.673 kb on - strand, within CSW01_03030at 600.675 kb on - strand, within CSW01_03030at 600.691 kb on - strand, within CSW01_03030at 600.701 kb on - strand, within CSW01_03030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
remove
598,251 + +0.0
598,259 - +0.3
598,259 - -0.4
598,259 - +1.7
598,360 + +0.2
598,360 + -2.3
598,406 + +0.9
598,414 - +0.1
598,414 - -2.1
598,494 - -4.6
598,568 - CSW01_03020 0.14 +0.4
598,574 + CSW01_03020 0.14 -3.6
598,575 - CSW01_03020 0.14 +0.3
598,582 - CSW01_03020 0.15 +0.0
598,592 - CSW01_03020 0.16 +0.2
598,604 + CSW01_03020 0.16 +0.9
598,604 + CSW01_03020 0.16 -0.0
598,604 + CSW01_03020 0.16 -3.6
598,612 - CSW01_03020 0.17 -0.4
598,612 - CSW01_03020 0.17 +0.3
598,612 - CSW01_03020 0.17 -0.6
598,619 + CSW01_03020 0.18 -0.1
598,714 + CSW01_03020 0.24 -2.8
598,722 - CSW01_03020 0.25 +0.0
598,765 + CSW01_03020 0.28 +0.2
598,773 - CSW01_03020 0.29 +1.3
598,773 - CSW01_03020 0.29 +0.2
599,012 + CSW01_03020 0.46 -2.2
599,030 - CSW01_03020 0.47 -1.6
599,079 + CSW01_03020 0.51 -2.4
599,087 - CSW01_03020 0.52 -2.1
599,087 - CSW01_03020 0.52 +0.6
599,087 - CSW01_03020 0.52 -1.3
599,135 - CSW01_03020 0.55 +0.1
599,135 - CSW01_03020 0.55 -0.2
599,162 + CSW01_03020 0.57 +0.5
599,162 + CSW01_03020 0.57 -1.8
599,177 + CSW01_03020 0.58 -1.0
599,177 + CSW01_03020 0.58 -1.5
599,177 + CSW01_03020 0.58 -2.3
599,177 + CSW01_03020 0.58 -4.3
599,177 + CSW01_03020 0.58 -1.1
599,177 + CSW01_03020 0.58 +0.4
599,240 - CSW01_03020 0.63 +0.2
599,271 - CSW01_03020 0.65 -2.9
599,271 - CSW01_03020 0.65 +0.7
599,378 + CSW01_03020 0.73 -0.1
599,409 + CSW01_03020 0.75 -1.0
599,441 + CSW01_03020 0.77 +0.6
599,443 - CSW01_03020 0.78 -0.1
599,443 - CSW01_03020 0.78 +1.0
599,454 + CSW01_03020 0.78 +0.9
599,472 - CSW01_03020 0.80 -1.1
599,583 + CSW01_03020 0.88 -2.7
599,583 + CSW01_03020 0.88 +0.1
599,586 + CSW01_03020 0.88 +0.1
599,641 + +0.4
599,719 - -2.4
599,884 + -0.4
599,951 - CSW01_03025 0.17 -0.2
600,035 + CSW01_03025 0.36 -0.8
600,107 - CSW01_03025 0.52 +1.7
600,162 + CSW01_03025 0.65 +2.0
600,177 + CSW01_03025 0.68 +0.7
600,180 - CSW01_03025 0.69 -2.3
600,185 - CSW01_03025 0.70 +1.4
600,242 - CSW01_03025 0.83 +1.3
600,310 + +1.1
600,310 + -2.7
600,529 + +0.5
600,666 - CSW01_03030 0.18 -2.0
600,673 - CSW01_03030 0.18 -0.7
600,675 - CSW01_03030 0.19 +0.8
600,691 - CSW01_03030 0.20 +1.6
600,701 - CSW01_03030 0.21 -0.2

Or see this region's nucleotide sequence