Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02780

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02770 and CSW01_02775 are separated by 48 nucleotidesCSW01_02775 and CSW01_02780 are separated by 7 nucleotidesCSW01_02780 and CSW01_02785 overlap by 38 nucleotidesCSW01_02785 and CSW01_02790 overlap by 4 nucleotidesCSW01_02790 and CSW01_02795 overlap by 4 nucleotides CSW01_02770: CSW01_02770 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 555,077 to 555,889 _02770 CSW01_02775: CSW01_02775 - glycerol-3-phosphate acyltransferase, at 555,938 to 556,564 _02775 CSW01_02780: CSW01_02780 - hypothetical protein, at 556,572 to 556,754 _02780 CSW01_02785: CSW01_02785 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 556,717 to 557,106 _02785 CSW01_02790: CSW01_02790 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 557,103 to 557,609 _02790 CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409 _02795 Position (kb) 556 557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 555.589 kb on - strand, within CSW01_02770at 555.610 kb on - strand, within CSW01_02770at 555.611 kb on + strand, within CSW01_02770at 555.619 kb on - strand, within CSW01_02770at 555.645 kb on + strand, within CSW01_02770at 555.677 kb on - strand, within CSW01_02770at 555.697 kb on - strand, within CSW01_02770at 555.704 kb on - strand, within CSW01_02770at 555.726 kb on + strand, within CSW01_02770at 555.749 kb on + strand, within CSW01_02770at 555.749 kb on + strand, within CSW01_02770at 555.749 kb on + strand, within CSW01_02770at 555.749 kb on + strand, within CSW01_02770at 555.749 kb on + strand, within CSW01_02770at 555.756 kb on + strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.757 kb on - strand, within CSW01_02770at 555.764 kb on - strand, within CSW01_02770at 555.764 kb on - strand, within CSW01_02770at 555.765 kb on - strand, within CSW01_02770at 555.765 kb on - strand, within CSW01_02770at 555.765 kb on - strand, within CSW01_02770at 555.810 kb on - strandat 555.846 kb on - strandat 555.917 kb on + strandat 555.920 kb on + strandat 555.935 kb on + strandat 555.943 kb on - strandat 555.943 kb on - strandat 555.953 kb on + strandat 556.026 kb on - strand, within CSW01_02775at 556.053 kb on + strand, within CSW01_02775at 556.055 kb on + strand, within CSW01_02775at 556.055 kb on + strand, within CSW01_02775at 556.077 kb on - strand, within CSW01_02775at 556.096 kb on + strand, within CSW01_02775at 556.100 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.101 kb on + strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.111 kb on - strand, within CSW01_02775at 556.123 kb on - strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.133 kb on + strand, within CSW01_02775at 556.135 kb on - strand, within CSW01_02775at 556.135 kb on - strand, within CSW01_02775at 556.159 kb on - strand, within CSW01_02775at 556.181 kb on - strand, within CSW01_02775at 556.182 kb on + strand, within CSW01_02775at 556.197 kb on + strand, within CSW01_02775at 556.206 kb on + strand, within CSW01_02775at 556.246 kb on - strand, within CSW01_02775at 556.293 kb on - strand, within CSW01_02775at 556.299 kb on - strand, within CSW01_02775at 556.357 kb on - strand, within CSW01_02775at 556.385 kb on + strand, within CSW01_02775at 556.385 kb on + strand, within CSW01_02775at 556.430 kb on + strand, within CSW01_02775at 556.445 kb on - strand, within CSW01_02775at 556.468 kb on + strand, within CSW01_02775at 556.468 kb on + strand, within CSW01_02775at 556.473 kb on + strand, within CSW01_02775at 556.488 kb on + strand, within CSW01_02775at 556.496 kb on - strand, within CSW01_02775at 556.559 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.669 kb on + strand, within CSW01_02780at 556.672 kb on - strand, within CSW01_02780at 556.739 kb on + strandat 557.128 kb on + strandat 557.153 kb on + strandat 557.211 kb on + strand, within CSW01_02790at 557.219 kb on - strand, within CSW01_02790at 557.247 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.414 kb on - strand, within CSW01_02790at 557.427 kb on - strand, within CSW01_02790at 557.432 kb on - strand, within CSW01_02790at 557.546 kb on + strand, within CSW01_02790at 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.639 kb on + strandat 557.645 kb on + strandat 557.710 kb on - strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.725 kb on - strand, within CSW01_02795

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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555,589 - CSW01_02770 0.63 -0.5
555,610 - CSW01_02770 0.66 +0.6
555,611 + CSW01_02770 0.66 +0.4
555,619 - CSW01_02770 0.67 -2.3
555,645 + CSW01_02770 0.70 +0.8
555,677 - CSW01_02770 0.74 -0.8
555,697 - CSW01_02770 0.76 -1.2
555,704 - CSW01_02770 0.77 +2.7
555,726 + CSW01_02770 0.80 -1.8
555,749 + CSW01_02770 0.83 -0.5
555,749 + CSW01_02770 0.83 +0.4
555,749 + CSW01_02770 0.83 +0.8
555,749 + CSW01_02770 0.83 -3.8
555,749 + CSW01_02770 0.83 -2.1
555,756 + CSW01_02770 0.84 -1.6
555,757 - CSW01_02770 0.84 -0.2
555,757 - CSW01_02770 0.84 -3.3
555,757 - CSW01_02770 0.84 -0.9
555,757 - CSW01_02770 0.84 -3.5
555,757 - CSW01_02770 0.84 +1.3
555,757 - CSW01_02770 0.84 -1.8
555,764 - CSW01_02770 0.85 +0.6
555,764 - CSW01_02770 0.85 +0.7
555,765 - CSW01_02770 0.85 +1.0
555,765 - CSW01_02770 0.85 -0.5
555,765 - CSW01_02770 0.85 -2.0
555,810 - -1.1
555,846 - -0.0
555,917 + +2.4
555,920 + -0.9
555,935 + +0.5
555,943 - +1.1
555,943 - -3.6
555,953 + -1.7
556,026 - CSW01_02775 0.14 -0.9
556,053 + CSW01_02775 0.18 -1.3
556,055 + CSW01_02775 0.19 +0.5
556,055 + CSW01_02775 0.19 -0.3
556,077 - CSW01_02775 0.22 +0.4
556,096 + CSW01_02775 0.25 -1.1
556,100 + CSW01_02775 0.26 -0.7
556,101 + CSW01_02775 0.26 -0.6
556,101 + CSW01_02775 0.26 -3.4
556,101 + CSW01_02775 0.26 -0.2
556,101 + CSW01_02775 0.26 +0.8
556,101 + CSW01_02775 0.26 -0.3
556,101 + CSW01_02775 0.26 +0.7
556,101 + CSW01_02775 0.26 -0.6
556,101 + CSW01_02775 0.26 -0.8
556,101 + CSW01_02775 0.26 +0.1
556,101 + CSW01_02775 0.26 -0.7
556,101 + CSW01_02775 0.26 +0.9
556,101 + CSW01_02775 0.26 +2.2
556,101 + CSW01_02775 0.26 -0.4
556,101 + CSW01_02775 0.26 +0.5
556,101 + CSW01_02775 0.26 -0.1
556,101 + CSW01_02775 0.26 -0.6
556,101 + CSW01_02775 0.26 +0.9
556,101 + CSW01_02775 0.26 -2.3
556,101 + CSW01_02775 0.26 -0.4
556,101 + CSW01_02775 0.26 -2.6
556,109 - CSW01_02775 0.27 -0.1
556,109 - CSW01_02775 0.27 +0.7
556,109 - CSW01_02775 0.27 -1.9
556,109 - CSW01_02775 0.27 +0.9
556,109 - CSW01_02775 0.27 +0.9
556,109 - CSW01_02775 0.27 +0.6
556,109 - CSW01_02775 0.27 +0.5
556,109 - CSW01_02775 0.27 +2.2
556,109 - CSW01_02775 0.27 -0.8
556,109 - CSW01_02775 0.27 -2.3
556,109 - CSW01_02775 0.27 -0.3
556,109 - CSW01_02775 0.27 -2.0
556,109 - CSW01_02775 0.27 -1.3
556,109 - CSW01_02775 0.27 -1.4
556,109 - CSW01_02775 0.27 +0.2
556,111 - CSW01_02775 0.28 -1.2
556,123 - CSW01_02775 0.30 -0.7
556,127 + CSW01_02775 0.30 -0.6
556,127 + CSW01_02775 0.30 -0.5
556,127 + CSW01_02775 0.30 -2.4
556,127 + CSW01_02775 0.30 +0.4
556,127 + CSW01_02775 0.30 +0.2
556,127 + CSW01_02775 0.30 +0.0
556,127 + CSW01_02775 0.30 -0.1
556,133 + CSW01_02775 0.31 +0.5
556,135 - CSW01_02775 0.31 +0.1
556,135 - CSW01_02775 0.31 -3.5
556,159 - CSW01_02775 0.35 +0.5
556,181 - CSW01_02775 0.39 -0.5
556,182 + CSW01_02775 0.39 -0.6
556,197 + CSW01_02775 0.41 -2.1
556,206 + CSW01_02775 0.43 -2.9
556,246 - CSW01_02775 0.49 +0.1
556,293 - CSW01_02775 0.57 +1.8
556,299 - CSW01_02775 0.58 +0.8
556,357 - CSW01_02775 0.67 -1.1
556,385 + CSW01_02775 0.71 -1.1
556,385 + CSW01_02775 0.71 +0.7
556,430 + CSW01_02775 0.78 +0.9
556,445 - CSW01_02775 0.81 -3.9
556,468 + CSW01_02775 0.85 -0.3
556,468 + CSW01_02775 0.85 -0.5
556,473 + CSW01_02775 0.85 -1.0
556,488 + CSW01_02775 0.88 +2.1
556,496 - CSW01_02775 0.89 +0.6
556,559 + -0.0
556,569 + +0.0
556,569 + -0.4
556,569 + +0.6
556,569 + -0.4
556,664 + CSW01_02780 0.50 +0.8
556,664 + CSW01_02780 0.50 +2.0
556,664 + CSW01_02780 0.50 +0.8
556,664 + CSW01_02780 0.50 +0.2
556,669 + CSW01_02780 0.53 -0.4
556,672 - CSW01_02780 0.55 +1.1
556,739 + +0.1
557,128 + -1.0
557,153 + -1.5
557,211 + CSW01_02790 0.21 -1.1
557,219 - CSW01_02790 0.23 -0.8
557,247 + CSW01_02790 0.28 -1.3
557,291 + CSW01_02790 0.37 +0.7
557,291 + CSW01_02790 0.37 -0.4
557,414 - CSW01_02790 0.61 -1.2
557,427 - CSW01_02790 0.64 -0.5
557,432 - CSW01_02790 0.65 +1.7
557,546 + CSW01_02790 0.87 -1.0
557,563 + -0.4
557,563 + +2.0
557,563 + +0.1
557,563 + -0.3
557,571 - -1.1
557,571 - +2.1
557,571 - -2.1
557,571 - -3.1
557,571 - -2.2
557,571 - -1.3
557,639 + +0.6
557,645 + +0.2
557,710 - CSW01_02795 0.13 -0.8
557,717 + CSW01_02795 0.14 -0.2
557,717 + CSW01_02795 0.14 -0.0
557,717 + CSW01_02795 0.14 -2.9
557,725 - CSW01_02795 0.15 +1.5

Or see this region's nucleotide sequence