Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02060 and CSW01_02065 are separated by 72 nucleotides CSW01_02065 and CSW01_02070 are separated by 463 nucleotides
CSW01_02060: CSW01_02060 - methionine synthase, at 407,778 to 411,458
_02060
CSW01_02065: CSW01_02065 - lysine-sensitive aspartokinase 3, at 411,531 to 412,886
_02065
CSW01_02070: CSW01_02070 - alanine--glyoxylate aminotransferase family protein, at 413,350 to 414,468
_02070
Position (kb) 411
412
413 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 410.545 kb on - strand, within CSW01_02060 at 410.557 kb on - strand, within CSW01_02060 at 410.557 kb on - strand, within CSW01_02060 at 410.602 kb on + strand, within CSW01_02060 at 410.767 kb on - strand, within CSW01_02060 at 410.786 kb on + strand, within CSW01_02060 at 410.812 kb on + strand, within CSW01_02060 at 410.819 kb on + strand, within CSW01_02060 at 410.819 kb on + strand, within CSW01_02060 at 410.827 kb on + strand, within CSW01_02060 at 410.827 kb on + strand, within CSW01_02060 at 410.827 kb on + strand, within CSW01_02060 at 410.829 kb on + strand, within CSW01_02060 at 410.835 kb on - strand, within CSW01_02060 at 410.835 kb on - strand, within CSW01_02060 at 410.859 kb on - strand, within CSW01_02060 at 411.015 kb on + strand, within CSW01_02060 at 411.015 kb on + strand, within CSW01_02060 at 411.023 kb on - strand, within CSW01_02060 at 411.121 kb on - strand at 411.187 kb on - strand at 411.208 kb on + strand at 411.210 kb on + strand at 411.216 kb on - strand at 411.260 kb on + strand at 411.268 kb on + strand at 411.365 kb on + strand at 411.373 kb on - strand at 411.373 kb on - strand at 411.386 kb on + strand at 411.388 kb on + strand at 411.389 kb on - strand at 411.394 kb on - strand at 411.399 kb on - strand at 411.406 kb on - strand at 411.406 kb on - strand at 411.406 kb on - strand at 411.446 kb on + strand at 411.454 kb on - strand at 411.478 kb on + strand at 411.584 kb on - strand at 411.596 kb on + strand at 411.609 kb on - strand at 411.645 kb on + strand at 411.662 kb on - strand at 411.664 kb on + strand at 411.664 kb on + strand at 411.759 kb on - strand, within CSW01_02065 at 411.812 kb on - strand, within CSW01_02065 at 411.817 kb on + strand, within CSW01_02065 at 411.825 kb on - strand, within CSW01_02065 at 411.825 kb on - strand, within CSW01_02065 at 411.845 kb on + strand, within CSW01_02065 at 411.910 kb on - strand, within CSW01_02065 at 411.933 kb on - strand, within CSW01_02065 at 411.938 kb on - strand, within CSW01_02065 at 411.965 kb on - strand, within CSW01_02065 at 411.965 kb on - strand, within CSW01_02065 at 411.965 kb on - strand, within CSW01_02065 at 411.970 kb on - strand, within CSW01_02065 at 411.987 kb on + strand, within CSW01_02065 at 411.990 kb on - strand, within CSW01_02065 at 412.043 kb on + strand, within CSW01_02065 at 412.051 kb on - strand, within CSW01_02065 at 412.222 kb on + strand, within CSW01_02065 at 412.245 kb on - strand, within CSW01_02065 at 412.314 kb on - strand, within CSW01_02065 at 412.314 kb on - strand, within CSW01_02065 at 412.314 kb on - strand, within CSW01_02065 at 412.433 kb on - strand, within CSW01_02065 at 412.441 kb on + strand, within CSW01_02065 at 412.443 kb on + strand, within CSW01_02065 at 412.451 kb on - strand, within CSW01_02065 at 412.459 kb on - strand, within CSW01_02065 at 412.492 kb on + strand, within CSW01_02065 at 412.508 kb on + strand, within CSW01_02065 at 412.529 kb on - strand, within CSW01_02065 at 412.566 kb on + strand, within CSW01_02065 at 412.615 kb on + strand, within CSW01_02065 at 412.709 kb on + strand, within CSW01_02065 at 412.709 kb on + strand, within CSW01_02065 at 412.715 kb on - strand, within CSW01_02065 at 412.715 kb on - strand, within CSW01_02065 at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.824 kb on + strand at 412.824 kb on + strand at 412.847 kb on + strand at 412.902 kb on - strand at 412.934 kb on + strand at 412.941 kb on + strand at 412.941 kb on - strand at 412.942 kb on - strand at 412.949 kb on - strand at 412.949 kb on - strand at 412.970 kb on + strand at 413.043 kb on + strand at 413.043 kb on + strand at 413.094 kb on + strand at 413.125 kb on - strand at 413.263 kb on + strand at 413.263 kb on + strand at 413.271 kb on + strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.272 kb on + strand at 413.290 kb on - strand at 413.308 kb on + strand at 413.316 kb on - strand at 413.330 kb on - strand at 413.393 kb on + strand at 413.393 kb on + strand at 413.401 kb on - strand at 413.489 kb on + strand, within CSW01_02070 at 413.489 kb on + strand, within CSW01_02070 at 413.491 kb on - strand, within CSW01_02070 at 413.497 kb on - strand, within CSW01_02070 at 413.497 kb on - strand, within CSW01_02070 at 413.564 kb on - strand, within CSW01_02070 at 413.569 kb on + strand, within CSW01_02070 at 413.652 kb on + strand, within CSW01_02070 at 413.660 kb on - strand, within CSW01_02070 at 413.680 kb on + strand, within CSW01_02070 at 413.688 kb on - strand, within CSW01_02070 at 413.808 kb on - strand, within CSW01_02070 at 413.817 kb on + strand, within CSW01_02070 at 413.826 kb on - strand, within CSW01_02070
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 410,545 - CSW01_02060 0.75 +0.8 410,557 - CSW01_02060 0.75 -0.4 410,557 - CSW01_02060 0.75 +2.0 410,602 + CSW01_02060 0.77 +0.9 410,767 - CSW01_02060 0.81 -2.8 410,786 + CSW01_02060 0.82 -1.5 410,812 + CSW01_02060 0.82 -0.9 410,819 + CSW01_02060 0.83 -0.6 410,819 + CSW01_02060 0.83 -0.2 410,827 + CSW01_02060 0.83 -1.7 410,827 + CSW01_02060 0.83 +0.6 410,827 + CSW01_02060 0.83 +0.8 410,829 + CSW01_02060 0.83 +0.9 410,835 - CSW01_02060 0.83 +3.3 410,835 - CSW01_02060 0.83 +1.5 410,859 - CSW01_02060 0.84 +0.2 411,015 + CSW01_02060 0.88 +0.5 411,015 + CSW01_02060 0.88 +0.4 411,023 - CSW01_02060 0.88 +0.3 411,121 - +0.1 411,187 - -0.7 411,208 + -2.5 411,210 + -2.5 411,216 - +0.8 411,260 + -1.5 411,268 + +1.3 411,365 + +0.6 411,373 - +0.7 411,373 - -0.2 411,386 + +0.8 411,388 + +1.9 411,389 - -4.2 411,394 - -2.8 411,399 - +0.7 411,406 - -0.4 411,406 - -0.2 411,406 - +2.4 411,446 + -0.4 411,454 - -1.8 411,478 + +0.6 411,584 - +1.2 411,596 + -1.1 411,609 - +0.8 411,645 + +1.2 411,662 - -2.3 411,664 + +0.8 411,664 + +1.2 411,759 - CSW01_02065 0.17 -1.7 411,812 - CSW01_02065 0.21 +0.9 411,817 + CSW01_02065 0.21 +0.1 411,825 - CSW01_02065 0.22 +0.8 411,825 - CSW01_02065 0.22 +0.2 411,845 + CSW01_02065 0.23 +0.6 411,910 - CSW01_02065 0.28 +0.2 411,933 - CSW01_02065 0.30 -0.3 411,938 - CSW01_02065 0.30 +1.3 411,965 - CSW01_02065 0.32 -2.0 411,965 - CSW01_02065 0.32 -3.2 411,965 - CSW01_02065 0.32 +1.4 411,970 - CSW01_02065 0.32 -2.5 411,987 + CSW01_02065 0.34 +0.3 411,990 - CSW01_02065 0.34 -2.4 412,043 + CSW01_02065 0.38 +0.1 412,051 - CSW01_02065 0.38 -0.0 412,222 + CSW01_02065 0.51 +0.6 412,245 - CSW01_02065 0.53 -0.1 412,314 - CSW01_02065 0.58 +2.5 412,314 - CSW01_02065 0.58 +1.7 412,314 - CSW01_02065 0.58 -2.5 412,433 - CSW01_02065 0.67 +1.6 412,441 + CSW01_02065 0.67 +0.9 412,443 + CSW01_02065 0.67 +0.7 412,451 - CSW01_02065 0.68 +1.2 412,459 - CSW01_02065 0.68 +3.3 412,492 + CSW01_02065 0.71 -0.9 412,508 + CSW01_02065 0.72 -3.6 412,529 - CSW01_02065 0.74 -2.1 412,566 + CSW01_02065 0.76 -1.0 412,615 + CSW01_02065 0.80 +1.7 412,709 + CSW01_02065 0.87 -1.5 412,709 + CSW01_02065 0.87 +0.1 412,715 - CSW01_02065 0.87 +1.6 412,715 - CSW01_02065 0.87 +0.6 412,757 + -3.5 412,757 + -2.5 412,757 + +0.9 412,757 + +0.3 412,757 + +0.8 412,757 + -0.3 412,757 + +0.5 412,757 + -4.3 412,757 + +1.2 412,757 + -2.5 412,757 + -1.3 412,757 + -0.4 412,757 + +0.0 412,757 + +0.9 412,757 + +1.5 412,757 + +0.9 412,757 + +0.3 412,757 + +0.3 412,757 + +0.7 412,757 + +1.4 412,765 - -0.8 412,765 - +0.6 412,765 - -0.7 412,765 - -1.4 412,765 - +1.6 412,765 - +0.3 412,765 - -2.4 412,765 - -1.7 412,765 - +0.1 412,765 - -3.0 412,765 - -0.3 412,765 - +0.4 412,824 + -1.3 412,824 + -2.4 412,847 + +0.5 412,902 - +0.7 412,934 + +0.4 412,941 + -2.8 412,941 - +0.6 412,942 - -0.9 412,949 - +1.9 412,949 - +0.6 412,970 + +1.0 413,043 + +2.0 413,043 + +0.2 413,094 + -1.8 413,125 - -3.0 413,263 + -1.1 413,263 + -2.6 413,271 + +1.8 413,271 - +2.5 413,271 - +0.9 413,271 - +0.0 413,271 - -1.8 413,271 - -3.4 413,272 + -0.0 413,290 - -0.7 413,308 + -2.5 413,316 - +0.4 413,330 - +1.4 413,393 + -0.2 413,393 + +1.3 413,401 - +0.7 413,489 + CSW01_02070 0.12 +1.2 413,489 + CSW01_02070 0.12 +0.4 413,491 - CSW01_02070 0.13 -2.2 413,497 - CSW01_02070 0.13 +0.8 413,497 - CSW01_02070 0.13 -0.9 413,564 - CSW01_02070 0.19 -3.5 413,569 + CSW01_02070 0.20 -1.9 413,652 + CSW01_02070 0.27 +0.4 413,660 - CSW01_02070 0.28 -0.5 413,680 + CSW01_02070 0.29 -1.9 413,688 - CSW01_02070 0.30 -2.7 413,808 - CSW01_02070 0.41 -1.1 413,817 + CSW01_02070 0.42 -1.8 413,826 - CSW01_02070 0.43 +0.8
Or see this region's nucleotide sequence