Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02060

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02055 and CSW01_02060 are separated by 196 nucleotidesCSW01_02060 and CSW01_02065 are separated by 72 nucleotides CSW01_02055: CSW01_02055 - sodium:proton antiporter, at 406,247 to 407,581 _02055 CSW01_02060: CSW01_02060 - methionine synthase, at 407,778 to 411,458 _02060 CSW01_02065: CSW01_02065 - lysine-sensitive aspartokinase 3, at 411,531 to 412,886 _02065 Position (kb) 407 408 409 410 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 406.874 kb on - strand, within CSW01_02055at 406.945 kb on - strand, within CSW01_02055at 406.978 kb on + strand, within CSW01_02055at 406.986 kb on - strand, within CSW01_02055at 407.001 kb on - strand, within CSW01_02055at 407.047 kb on + strand, within CSW01_02055at 407.055 kb on - strand, within CSW01_02055at 407.227 kb on + strand, within CSW01_02055at 407.227 kb on + strand, within CSW01_02055at 407.255 kb on - strand, within CSW01_02055at 407.349 kb on - strand, within CSW01_02055at 407.427 kb on - strand, within CSW01_02055at 407.427 kb on - strand, within CSW01_02055at 407.508 kb on - strandat 407.508 kb on - strandat 407.573 kb on - strandat 407.573 kb on - strandat 407.573 kb on - strandat 407.886 kb on + strandat 407.968 kb on + strandat 408.028 kb on + strandat 408.036 kb on - strandat 408.057 kb on + strandat 408.069 kb on + strandat 408.082 kb on - strandat 408.087 kb on - strandat 408.231 kb on - strand, within CSW01_02060at 408.306 kb on + strand, within CSW01_02060at 408.325 kb on - strand, within CSW01_02060at 408.345 kb on + strand, within CSW01_02060at 408.433 kb on + strand, within CSW01_02060at 408.440 kb on - strand, within CSW01_02060at 408.480 kb on + strand, within CSW01_02060at 408.510 kb on + strand, within CSW01_02060at 408.510 kb on + strand, within CSW01_02060at 408.518 kb on - strand, within CSW01_02060at 408.518 kb on - strand, within CSW01_02060at 408.715 kb on + strand, within CSW01_02060at 408.723 kb on - strand, within CSW01_02060at 408.724 kb on - strand, within CSW01_02060at 408.729 kb on - strand, within CSW01_02060at 408.758 kb on - strand, within CSW01_02060at 408.768 kb on - strand, within CSW01_02060at 408.772 kb on + strand, within CSW01_02060at 408.775 kb on - strand, within CSW01_02060at 408.819 kb on - strand, within CSW01_02060at 408.819 kb on - strand, within CSW01_02060at 408.857 kb on + strand, within CSW01_02060at 408.865 kb on + strand, within CSW01_02060at 408.865 kb on + strand, within CSW01_02060at 408.898 kb on - strand, within CSW01_02060at 408.927 kb on + strand, within CSW01_02060at 408.959 kb on - strand, within CSW01_02060at 408.993 kb on + strand, within CSW01_02060at 409.020 kb on - strand, within CSW01_02060at 409.050 kb on - strand, within CSW01_02060at 409.084 kb on + strand, within CSW01_02060at 409.110 kb on + strand, within CSW01_02060at 409.110 kb on + strand, within CSW01_02060at 409.127 kb on + strand, within CSW01_02060at 409.127 kb on + strand, within CSW01_02060at 409.127 kb on + strand, within CSW01_02060at 409.135 kb on - strand, within CSW01_02060at 409.187 kb on + strand, within CSW01_02060at 409.218 kb on - strand, within CSW01_02060at 409.251 kb on + strand, within CSW01_02060at 409.253 kb on - strand, within CSW01_02060at 409.259 kb on - strand, within CSW01_02060at 409.362 kb on - strand, within CSW01_02060at 409.372 kb on + strand, within CSW01_02060at 409.380 kb on - strand, within CSW01_02060at 409.380 kb on - strand, within CSW01_02060at 409.424 kb on + strand, within CSW01_02060at 409.540 kb on + strand, within CSW01_02060at 409.548 kb on - strand, within CSW01_02060at 409.573 kb on + strand, within CSW01_02060at 409.581 kb on - strand, within CSW01_02060at 409.581 kb on - strand, within CSW01_02060at 409.673 kb on + strand, within CSW01_02060at 409.789 kb on - strand, within CSW01_02060at 409.879 kb on + strand, within CSW01_02060at 409.887 kb on - strand, within CSW01_02060at 410.060 kb on - strand, within CSW01_02060at 410.064 kb on + strand, within CSW01_02060at 410.072 kb on - strand, within CSW01_02060at 410.085 kb on + strand, within CSW01_02060at 410.093 kb on + strand, within CSW01_02060at 410.093 kb on + strand, within CSW01_02060at 410.093 kb on - strand, within CSW01_02060at 410.189 kb on + strand, within CSW01_02060at 410.193 kb on + strand, within CSW01_02060at 410.197 kb on - strand, within CSW01_02060at 410.254 kb on + strand, within CSW01_02060at 410.254 kb on + strand, within CSW01_02060at 410.290 kb on + strand, within CSW01_02060at 410.298 kb on - strand, within CSW01_02060at 410.324 kb on + strand, within CSW01_02060at 410.324 kb on + strand, within CSW01_02060at 410.335 kb on + strand, within CSW01_02060at 410.345 kb on - strand, within CSW01_02060at 410.368 kb on + strand, within CSW01_02060at 410.368 kb on + strand, within CSW01_02060at 410.368 kb on + strand, within CSW01_02060at 410.368 kb on + strand, within CSW01_02060at 410.368 kb on + strand, within CSW01_02060at 410.370 kb on + strand, within CSW01_02060at 410.370 kb on + strand, within CSW01_02060at 410.376 kb on - strand, within CSW01_02060at 410.376 kb on - strand, within CSW01_02060at 410.376 kb on - strand, within CSW01_02060at 410.376 kb on - strand, within CSW01_02060at 410.378 kb on - strand, within CSW01_02060at 410.383 kb on + strand, within CSW01_02060at 410.385 kb on + strand, within CSW01_02060at 410.393 kb on - strand, within CSW01_02060at 410.451 kb on + strand, within CSW01_02060at 410.457 kb on - strand, within CSW01_02060at 410.489 kb on + strand, within CSW01_02060at 410.502 kb on - strand, within CSW01_02060at 410.545 kb on - strand, within CSW01_02060at 410.557 kb on - strand, within CSW01_02060at 410.557 kb on - strand, within CSW01_02060at 410.602 kb on + strand, within CSW01_02060at 410.767 kb on - strand, within CSW01_02060at 410.786 kb on + strand, within CSW01_02060at 410.812 kb on + strand, within CSW01_02060at 410.819 kb on + strand, within CSW01_02060at 410.819 kb on + strand, within CSW01_02060at 410.827 kb on + strand, within CSW01_02060at 410.827 kb on + strand, within CSW01_02060at 410.827 kb on + strand, within CSW01_02060at 410.829 kb on + strand, within CSW01_02060at 410.835 kb on - strand, within CSW01_02060at 410.835 kb on - strand, within CSW01_02060at 410.859 kb on - strand, within CSW01_02060at 411.015 kb on + strand, within CSW01_02060at 411.015 kb on + strand, within CSW01_02060at 411.023 kb on - strand, within CSW01_02060at 411.121 kb on - strandat 411.187 kb on - strandat 411.208 kb on + strandat 411.210 kb on + strandat 411.216 kb on - strandat 411.260 kb on + strandat 411.268 kb on + strandat 411.365 kb on + strandat 411.373 kb on - strandat 411.373 kb on - strandat 411.386 kb on + strandat 411.388 kb on + strandat 411.389 kb on - strandat 411.394 kb on - strandat 411.399 kb on - strandat 411.406 kb on - strandat 411.406 kb on - strandat 411.406 kb on - strandat 411.446 kb on + strandat 411.454 kb on - strandat 411.478 kb on + strandat 411.584 kb on - strandat 411.596 kb on + strandat 411.609 kb on - strandat 411.645 kb on + strandat 411.662 kb on - strandat 411.664 kb on + strandat 411.664 kb on + strandat 411.759 kb on - strand, within CSW01_02065at 411.812 kb on - strand, within CSW01_02065at 411.817 kb on + strand, within CSW01_02065at 411.825 kb on - strand, within CSW01_02065at 411.825 kb on - strand, within CSW01_02065at 411.845 kb on + strand, within CSW01_02065at 411.910 kb on - strand, within CSW01_02065at 411.933 kb on - strand, within CSW01_02065at 411.938 kb on - strand, within CSW01_02065at 411.965 kb on - strand, within CSW01_02065at 411.965 kb on - strand, within CSW01_02065at 411.965 kb on - strand, within CSW01_02065at 411.970 kb on - strand, within CSW01_02065at 411.987 kb on + strand, within CSW01_02065at 411.990 kb on - strand, within CSW01_02065at 412.043 kb on + strand, within CSW01_02065at 412.051 kb on - strand, within CSW01_02065at 412.222 kb on + strand, within CSW01_02065at 412.245 kb on - strand, within CSW01_02065at 412.314 kb on - strand, within CSW01_02065at 412.314 kb on - strand, within CSW01_02065at 412.314 kb on - strand, within CSW01_02065at 412.433 kb on - strand, within CSW01_02065at 412.441 kb on + strand, within CSW01_02065at 412.443 kb on + strand, within CSW01_02065at 412.451 kb on - strand, within CSW01_02065

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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406,874 - CSW01_02055 0.47 -0.3
406,945 - CSW01_02055 0.52 -2.9
406,978 + CSW01_02055 0.55 -3.3
406,986 - CSW01_02055 0.55 +0.5
407,001 - CSW01_02055 0.56 +0.2
407,047 + CSW01_02055 0.60 +0.6
407,055 - CSW01_02055 0.61 +1.0
407,227 + CSW01_02055 0.73 +0.8
407,227 + CSW01_02055 0.73 -0.1
407,255 - CSW01_02055 0.76 +0.2
407,349 - CSW01_02055 0.83 -0.7
407,427 - CSW01_02055 0.88 -3.7
407,427 - CSW01_02055 0.88 -4.0
407,508 - -0.4
407,508 - -0.0
407,573 - +0.3
407,573 - -0.7
407,573 - -3.6
407,886 + +1.2
407,968 + -0.5
408,028 + +0.2
408,036 - +0.3
408,057 + -1.0
408,069 + -1.6
408,082 - -3.6
408,087 - -3.3
408,231 - CSW01_02060 0.12 -1.4
408,306 + CSW01_02060 0.14 -0.8
408,325 - CSW01_02060 0.15 -2.4
408,345 + CSW01_02060 0.15 -0.0
408,433 + CSW01_02060 0.18 -3.2
408,440 - CSW01_02060 0.18 +1.2
408,480 + CSW01_02060 0.19 +0.4
408,510 + CSW01_02060 0.20 -0.8
408,510 + CSW01_02060 0.20 -0.4
408,518 - CSW01_02060 0.20 +0.5
408,518 - CSW01_02060 0.20 -0.8
408,715 + CSW01_02060 0.25 +0.9
408,723 - CSW01_02060 0.26 -1.3
408,724 - CSW01_02060 0.26 -0.3
408,729 - CSW01_02060 0.26 -1.9
408,758 - CSW01_02060 0.27 -2.9
408,768 - CSW01_02060 0.27 +0.5
408,772 + CSW01_02060 0.27 -4.7
408,775 - CSW01_02060 0.27 +0.1
408,819 - CSW01_02060 0.28 -0.4
408,819 - CSW01_02060 0.28 +0.9
408,857 + CSW01_02060 0.29 +1.1
408,865 + CSW01_02060 0.30 +0.8
408,865 + CSW01_02060 0.30 +0.0
408,898 - CSW01_02060 0.30 +0.8
408,927 + CSW01_02060 0.31 -1.0
408,959 - CSW01_02060 0.32 -0.5
408,993 + CSW01_02060 0.33 -1.5
409,020 - CSW01_02060 0.34 -1.1
409,050 - CSW01_02060 0.35 +0.9
409,084 + CSW01_02060 0.35 -0.4
409,110 + CSW01_02060 0.36 +2.0
409,110 + CSW01_02060 0.36 -3.1
409,127 + CSW01_02060 0.37 -0.9
409,127 + CSW01_02060 0.37 -1.7
409,127 + CSW01_02060 0.37 -1.9
409,135 - CSW01_02060 0.37 -3.4
409,187 + CSW01_02060 0.38 +2.0
409,218 - CSW01_02060 0.39 +0.9
409,251 + CSW01_02060 0.40 -0.2
409,253 - CSW01_02060 0.40 -0.7
409,259 - CSW01_02060 0.40 +0.1
409,362 - CSW01_02060 0.43 +0.5
409,372 + CSW01_02060 0.43 +0.7
409,380 - CSW01_02060 0.44 -0.6
409,380 - CSW01_02060 0.44 +2.3
409,424 + CSW01_02060 0.45 +0.5
409,540 + CSW01_02060 0.48 +1.1
409,548 - CSW01_02060 0.48 +0.5
409,573 + CSW01_02060 0.49 -1.8
409,581 - CSW01_02060 0.49 -0.3
409,581 - CSW01_02060 0.49 -1.2
409,673 + CSW01_02060 0.51 -0.0
409,789 - CSW01_02060 0.55 -2.5
409,879 + CSW01_02060 0.57 -0.0
409,887 - CSW01_02060 0.57 -0.1
410,060 - CSW01_02060 0.62 -1.5
410,064 + CSW01_02060 0.62 -2.0
410,072 - CSW01_02060 0.62 +1.5
410,085 + CSW01_02060 0.63 +0.8
410,093 + CSW01_02060 0.63 +2.2
410,093 + CSW01_02060 0.63 +2.2
410,093 - CSW01_02060 0.63 +0.7
410,189 + CSW01_02060 0.65 +1.9
410,193 + CSW01_02060 0.66 -1.8
410,197 - CSW01_02060 0.66 -0.7
410,254 + CSW01_02060 0.67 +0.4
410,254 + CSW01_02060 0.67 +0.4
410,290 + CSW01_02060 0.68 +1.4
410,298 - CSW01_02060 0.68 +0.0
410,324 + CSW01_02060 0.69 +1.6
410,324 + CSW01_02060 0.69 +1.4
410,335 + CSW01_02060 0.69 +0.5
410,345 - CSW01_02060 0.70 +0.7
410,368 + CSW01_02060 0.70 -1.9
410,368 + CSW01_02060 0.70 -2.6
410,368 + CSW01_02060 0.70 +0.0
410,368 + CSW01_02060 0.70 -0.3
410,368 + CSW01_02060 0.70 +0.3
410,370 + CSW01_02060 0.70 +0.2
410,370 + CSW01_02060 0.70 +1.0
410,376 - CSW01_02060 0.71 -1.2
410,376 - CSW01_02060 0.71 -3.2
410,376 - CSW01_02060 0.71 +0.4
410,376 - CSW01_02060 0.71 +0.4
410,378 - CSW01_02060 0.71 -1.0
410,383 + CSW01_02060 0.71 -0.8
410,385 + CSW01_02060 0.71 -2.1
410,393 - CSW01_02060 0.71 +0.2
410,451 + CSW01_02060 0.73 +1.2
410,457 - CSW01_02060 0.73 -1.8
410,489 + CSW01_02060 0.74 -0.9
410,502 - CSW01_02060 0.74 -1.0
410,545 - CSW01_02060 0.75 +0.8
410,557 - CSW01_02060 0.75 -0.4
410,557 - CSW01_02060 0.75 +2.0
410,602 + CSW01_02060 0.77 +0.9
410,767 - CSW01_02060 0.81 -2.8
410,786 + CSW01_02060 0.82 -1.5
410,812 + CSW01_02060 0.82 -0.9
410,819 + CSW01_02060 0.83 -0.6
410,819 + CSW01_02060 0.83 -0.2
410,827 + CSW01_02060 0.83 -1.7
410,827 + CSW01_02060 0.83 +0.6
410,827 + CSW01_02060 0.83 +0.8
410,829 + CSW01_02060 0.83 +0.9
410,835 - CSW01_02060 0.83 +3.3
410,835 - CSW01_02060 0.83 +1.5
410,859 - CSW01_02060 0.84 +0.2
411,015 + CSW01_02060 0.88 +0.5
411,015 + CSW01_02060 0.88 +0.4
411,023 - CSW01_02060 0.88 +0.3
411,121 - +0.1
411,187 - -0.7
411,208 + -2.5
411,210 + -2.5
411,216 - +0.8
411,260 + -1.5
411,268 + +1.3
411,365 + +0.6
411,373 - +0.7
411,373 - -0.2
411,386 + +0.8
411,388 + +1.9
411,389 - -4.2
411,394 - -2.8
411,399 - +0.7
411,406 - -0.4
411,406 - -0.2
411,406 - +2.4
411,446 + -0.4
411,454 - -1.8
411,478 + +0.6
411,584 - +1.2
411,596 + -1.1
411,609 - +0.8
411,645 + +1.2
411,662 - -2.3
411,664 + +0.8
411,664 + +1.2
411,759 - CSW01_02065 0.17 -1.7
411,812 - CSW01_02065 0.21 +0.9
411,817 + CSW01_02065 0.21 +0.1
411,825 - CSW01_02065 0.22 +0.8
411,825 - CSW01_02065 0.22 +0.2
411,845 + CSW01_02065 0.23 +0.6
411,910 - CSW01_02065 0.28 +0.2
411,933 - CSW01_02065 0.30 -0.3
411,938 - CSW01_02065 0.30 +1.3
411,965 - CSW01_02065 0.32 -2.0
411,965 - CSW01_02065 0.32 -3.2
411,965 - CSW01_02065 0.32 +1.4
411,970 - CSW01_02065 0.32 -2.5
411,987 + CSW01_02065 0.34 +0.3
411,990 - CSW01_02065 0.34 -2.4
412,043 + CSW01_02065 0.38 +0.1
412,051 - CSW01_02065 0.38 -0.0
412,222 + CSW01_02065 0.51 +0.6
412,245 - CSW01_02065 0.53 -0.1
412,314 - CSW01_02065 0.58 +2.5
412,314 - CSW01_02065 0.58 +1.7
412,314 - CSW01_02065 0.58 -2.5
412,433 - CSW01_02065 0.67 +1.6
412,441 + CSW01_02065 0.67 +0.9
412,443 + CSW01_02065 0.67 +0.7
412,451 - CSW01_02065 0.68 +1.2

Or see this region's nucleotide sequence