Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01755 and CSW01_01760 overlap by 8 nucleotides CSW01_01760 and CSW01_01765 are separated by 122 nucleotides CSW01_01765 and CSW01_01770 are separated by 158 nucleotides CSW01_01770 and CSW01_01775 are separated by 34 nucleotides
CSW01_01755: CSW01_01755 - phosphatidylserine decarboxylase proenzyme, at 357,761 to 358,618
_01755
CSW01_01760: CSW01_01760 - ribosome small subunit-dependent GTPase, at 358,611 to 359,775
_01760
CSW01_01765: CSW01_01765 - oligoribonuclease, at 359,898 to 360,443
_01765
CSW01_01770: CSW01_01770 - tRNA-Gly, at 360,602 to 360,677
_01770
CSW01_01775: CSW01_01775 - tRNA-Gly, at 360,712 to 360,787
_01775
Position (kb) 358
359
360 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 357.619 kb on - strand at 357.643 kb on + strand at 357.653 kb on + strand at 357.653 kb on + strand at 357.653 kb on + strand at 357.653 kb on + strand at 357.653 kb on + strand at 357.653 kb on + strand at 357.661 kb on - strand at 357.661 kb on - strand at 357.718 kb on + strand at 357.728 kb on + strand at 357.746 kb on + strand at 357.754 kb on - strand at 357.756 kb on - strand at 357.772 kb on - strand at 357.772 kb on - strand at 357.774 kb on + strand at 357.774 kb on + strand at 358.645 kb on - strand at 358.647 kb on - strand at 358.656 kb on - strand at 358.696 kb on - strand at 359.777 kb on + strand at 359.783 kb on + strand at 359.785 kb on - strand at 359.785 kb on - strand at 359.809 kb on - strand at 359.828 kb on + strand at 360.574 kb on + strand at 360.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 357,619 - -1.0 357,643 + -0.2 357,653 + -0.5 357,653 + +0.2 357,653 + +0.4 357,653 + -0.2 357,653 + +0.9 357,653 + -0.2 357,661 - -0.9 357,661 - -1.0 357,718 + +1.0 357,728 + -1.0 357,746 + -0.9 357,754 - -1.2 357,756 - +0.8 357,772 - -2.4 357,772 - -2.0 357,774 + +1.6 357,774 + +0.1 358,645 - -0.0 358,647 - +0.6 358,656 - -4.4 358,696 - -2.7 359,777 + -1.2 359,783 + +1.3 359,785 - +0.6 359,785 - +0.8 359,809 - -0.4 359,828 + +0.1 360,574 + -2.5 360,574 + -3.8
Or see this region's nucleotide sequence