Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01730

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01720 and CSW01_01725 are separated by 5 nucleotidesCSW01_01725 and CSW01_01730 are separated by 86 nucleotidesCSW01_01730 and CSW01_01735 overlap by 4 nucleotides CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330 _01720 CSW01_01725: CSW01_01725 - TetR family transcriptional regulator, at 350,336 to 351,064 _01725 CSW01_01730: CSW01_01730 - acetyltransferase, at 351,151 to 352,110 _01730 CSW01_01735: CSW01_01735 - peptidase M23, at 352,107 to 353,255 _01735 Position (kb) 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 350.384 kb on + strandat 350.384 kb on + strandat 350.384 kb on + strandat 350.392 kb on - strandat 350.477 kb on - strand, within CSW01_01725at 350.483 kb on + strand, within CSW01_01725at 350.494 kb on + strand, within CSW01_01725at 350.506 kb on + strand, within CSW01_01725at 350.507 kb on - strand, within CSW01_01725at 350.527 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.637 kb on - strand, within CSW01_01725at 350.649 kb on - strand, within CSW01_01725at 350.775 kb on + strand, within CSW01_01725at 350.907 kb on + strand, within CSW01_01725at 350.946 kb on - strand, within CSW01_01725at 351.031 kb on + strandat 351.053 kb on + strandat 351.053 kb on + strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.072 kb on - strandat 351.079 kb on - strandat 351.085 kb on + strandat 351.415 kb on + strand, within CSW01_01730at 351.454 kb on - strand, within CSW01_01730at 351.523 kb on - strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.540 kb on - strand, within CSW01_01730at 351.546 kb on + strand, within CSW01_01730at 351.579 kb on - strand, within CSW01_01730at 351.598 kb on - strand, within CSW01_01730at 351.640 kb on - strand, within CSW01_01730at 351.652 kb on + strand, within CSW01_01730at 351.713 kb on - strand, within CSW01_01730at 351.905 kb on - strand, within CSW01_01730at 351.939 kb on + strand, within CSW01_01730at 351.939 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.959 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730at 352.120 kb on - strandat 352.157 kb on + strandat 352.164 kb on + strandat 352.172 kb on - strandat 352.172 kb on - strandat 352.199 kb on - strandat 352.220 kb on - strandat 352.251 kb on - strand, within CSW01_01735at 352.253 kb on + strand, within CSW01_01735at 352.264 kb on + strand, within CSW01_01735at 352.267 kb on - strand, within CSW01_01735at 352.282 kb on - strand, within CSW01_01735at 352.285 kb on + strand, within CSW01_01735at 352.293 kb on - strand, within CSW01_01735at 352.313 kb on + strand, within CSW01_01735at 352.313 kb on + strand, within CSW01_01735at 352.318 kb on + strand, within CSW01_01735at 352.348 kb on - strand, within CSW01_01735at 352.363 kb on + strand, within CSW01_01735at 352.363 kb on + strand, within CSW01_01735at 352.395 kb on + strand, within CSW01_01735at 352.395 kb on + strand, within CSW01_01735at 352.403 kb on - strand, within CSW01_01735at 352.403 kb on - strand, within CSW01_01735at 352.423 kb on + strand, within CSW01_01735at 352.423 kb on + strand, within CSW01_01735at 352.441 kb on - strand, within CSW01_01735at 352.455 kb on + strand, within CSW01_01735at 352.474 kb on + strand, within CSW01_01735at 352.503 kb on + strand, within CSW01_01735at 352.511 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.653 kb on - strand, within CSW01_01735at 352.665 kb on + strand, within CSW01_01735at 352.679 kb on - strand, within CSW01_01735at 352.700 kb on + strand, within CSW01_01735at 352.709 kb on + strand, within CSW01_01735at 352.717 kb on - strand, within CSW01_01735at 352.721 kb on + strand, within CSW01_01735at 352.771 kb on - strand, within CSW01_01735at 352.803 kb on + strand, within CSW01_01735at 352.811 kb on - strand, within CSW01_01735at 352.857 kb on - strand, within CSW01_01735at 352.889 kb on - strand, within CSW01_01735at 352.927 kb on - strand, within CSW01_01735at 352.948 kb on + strand, within CSW01_01735at 352.958 kb on + strand, within CSW01_01735at 353.042 kb on + strand, within CSW01_01735

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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350,384 + -3.6
350,384 + +1.0
350,384 + -0.1
350,392 - +0.3
350,477 - CSW01_01725 0.19 -2.8
350,483 + CSW01_01725 0.20 +1.1
350,494 + CSW01_01725 0.22 -2.3
350,506 + CSW01_01725 0.23 +0.9
350,507 - CSW01_01725 0.23 -3.3
350,527 + CSW01_01725 0.26 -3.7
350,596 + CSW01_01725 0.36 -0.1
350,596 + CSW01_01725 0.36 -1.9
350,637 - CSW01_01725 0.41 -1.0
350,649 - CSW01_01725 0.43 +0.5
350,775 + CSW01_01725 0.60 +1.1
350,907 + CSW01_01725 0.78 -0.1
350,946 - CSW01_01725 0.84 -2.0
351,031 + -0.7
351,053 + -1.4
351,053 + +2.5
351,061 - +0.9
351,061 - -1.2
351,061 - -2.1
351,061 - -1.1
351,072 - +0.5
351,079 - -1.0
351,085 + +1.4
351,415 + CSW01_01730 0.28 -0.7
351,454 - CSW01_01730 0.32 +0.4
351,523 - CSW01_01730 0.39 +1.7
351,532 + CSW01_01730 0.40 -1.2
351,532 + CSW01_01730 0.40 +1.0
351,540 - CSW01_01730 0.41 -0.6
351,546 + CSW01_01730 0.41 +0.5
351,579 - CSW01_01730 0.45 -3.5
351,598 - CSW01_01730 0.47 +0.8
351,640 - CSW01_01730 0.51 +2.5
351,652 + CSW01_01730 0.52 +1.3
351,713 - CSW01_01730 0.59 -3.4
351,905 - CSW01_01730 0.79 +1.2
351,939 + CSW01_01730 0.82 +1.3
351,939 - CSW01_01730 0.82 +1.3
351,947 - CSW01_01730 0.83 +1.0
351,947 - CSW01_01730 0.83 -1.2
351,947 - CSW01_01730 0.83 +0.8
351,947 - CSW01_01730 0.83 +1.4
351,947 - CSW01_01730 0.83 -2.2
351,947 - CSW01_01730 0.83 -0.4
351,951 + CSW01_01730 0.83 +0.5
351,951 + CSW01_01730 0.83 -0.2
351,959 - CSW01_01730 0.84 +0.6
351,972 - CSW01_01730 0.86 -1.0
351,972 - CSW01_01730 0.86 -2.1
352,120 - +1.2
352,157 + +2.1
352,164 + -2.8
352,172 - +0.8
352,172 - +0.8
352,199 - +1.3
352,220 - +1.1
352,251 - CSW01_01735 0.13 +0.5
352,253 + CSW01_01735 0.13 +1.9
352,264 + CSW01_01735 0.14 +1.1
352,267 - CSW01_01735 0.14 +0.7
352,282 - CSW01_01735 0.15 -0.7
352,285 + CSW01_01735 0.15 +1.1
352,293 - CSW01_01735 0.16 +1.2
352,313 + CSW01_01735 0.18 +1.4
352,313 + CSW01_01735 0.18 -2.3
352,318 + CSW01_01735 0.18 +0.2
352,348 - CSW01_01735 0.21 -0.3
352,363 + CSW01_01735 0.22 +1.5
352,363 + CSW01_01735 0.22 -3.3
352,395 + CSW01_01735 0.25 +1.1
352,395 + CSW01_01735 0.25 +0.0
352,403 - CSW01_01735 0.26 +1.4
352,403 - CSW01_01735 0.26 -2.5
352,423 + CSW01_01735 0.28 +0.5
352,423 + CSW01_01735 0.28 +1.0
352,441 - CSW01_01735 0.29 +0.8
352,455 + CSW01_01735 0.30 +0.2
352,474 + CSW01_01735 0.32 -0.6
352,503 + CSW01_01735 0.34 -2.4
352,511 - CSW01_01735 0.35 +0.2
352,551 - CSW01_01735 0.39 +0.8
352,551 - CSW01_01735 0.39 -2.5
352,653 - CSW01_01735 0.48 +1.7
352,665 + CSW01_01735 0.49 +0.4
352,679 - CSW01_01735 0.50 -0.2
352,700 + CSW01_01735 0.52 -1.2
352,709 + CSW01_01735 0.52 +0.7
352,717 - CSW01_01735 0.53 +0.4
352,721 + CSW01_01735 0.53 +1.0
352,771 - CSW01_01735 0.58 -0.2
352,803 + CSW01_01735 0.61 +0.4
352,811 - CSW01_01735 0.61 +1.9
352,857 - CSW01_01735 0.65 +3.2
352,889 - CSW01_01735 0.68 +0.9
352,927 - CSW01_01735 0.71 -0.7
352,948 + CSW01_01735 0.73 +0.2
352,958 + CSW01_01735 0.74 +1.7
353,042 + CSW01_01735 0.81 -0.6

Or see this region's nucleotide sequence