Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01190

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01185 and CSW01_01190 are separated by 61 nucleotidesCSW01_01190 and CSW01_01195 are separated by 42 nucleotides CSW01_01185: CSW01_01185 - ADP-heptose--LPS heptosyltransferase, at 228,877 to 229,914 _01185 CSW01_01190: CSW01_01190 - glycosyltransferase family 2 protein, at 229,976 to 230,755 _01190 CSW01_01195: CSW01_01195 - ADP-heptose--LPS heptosyltransferase I, at 230,798 to 231,871 _01195 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 229.015 kb on + strand, within CSW01_01185at 229.025 kb on - strand, within CSW01_01185at 229.049 kb on + strand, within CSW01_01185at 229.057 kb on - strand, within CSW01_01185at 229.085 kb on - strand, within CSW01_01185at 229.089 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.142 kb on - strand, within CSW01_01185at 229.144 kb on + strand, within CSW01_01185at 229.152 kb on - strand, within CSW01_01185at 229.164 kb on - strand, within CSW01_01185at 229.227 kb on + strand, within CSW01_01185at 229.240 kb on - strand, within CSW01_01185at 229.345 kb on + strand, within CSW01_01185at 229.352 kb on - strand, within CSW01_01185at 229.363 kb on + strand, within CSW01_01185at 229.401 kb on + strand, within CSW01_01185at 229.423 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.484 kb on + strand, within CSW01_01185at 229.494 kb on + strand, within CSW01_01185at 229.528 kb on - strand, within CSW01_01185at 229.535 kb on + strand, within CSW01_01185at 229.653 kb on + strand, within CSW01_01185at 229.665 kb on + strand, within CSW01_01185at 229.741 kb on + strand, within CSW01_01185at 229.774 kb on + strand, within CSW01_01185at 229.832 kb on - strandat 229.858 kb on + strandat 229.886 kb on + strandat 229.893 kb on + strandat 229.908 kb on + strandat 229.908 kb on + strandat 229.967 kb on + strandat 229.983 kb on + strandat 230.007 kb on + strandat 230.009 kb on + strandat 230.033 kb on + strandat 230.033 kb on + strandat 230.033 kb on + strandat 230.038 kb on + strandat 230.041 kb on - strandat 230.043 kb on + strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.051 kb on - strandat 230.131 kb on + strand, within CSW01_01190at 230.146 kb on - strand, within CSW01_01190at 230.156 kb on - strand, within CSW01_01190at 230.222 kb on + strand, within CSW01_01190at 230.234 kb on + strand, within CSW01_01190at 230.269 kb on - strand, within CSW01_01190at 230.330 kb on + strand, within CSW01_01190at 230.414 kb on - strand, within CSW01_01190at 230.426 kb on + strand, within CSW01_01190at 230.568 kb on - strand, within CSW01_01190at 230.601 kb on + strand, within CSW01_01190at 230.601 kb on + strand, within CSW01_01190at 230.609 kb on - strand, within CSW01_01190at 230.657 kb on + strand, within CSW01_01190at 230.670 kb on - strand, within CSW01_01190at 230.680 kb on - strandat 230.680 kb on - strandat 230.825 kb on - strandat 230.829 kb on + strandat 230.868 kb on + strandat 230.868 kb on + strandat 230.876 kb on - strandat 230.997 kb on + strand, within CSW01_01195at 230.997 kb on + strand, within CSW01_01195at 231.005 kb on - strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.149 kb on + strand, within CSW01_01195at 231.149 kb on + strand, within CSW01_01195at 231.265 kb on + strand, within CSW01_01195at 231.275 kb on + strand, within CSW01_01195at 231.283 kb on - strand, within CSW01_01195at 231.283 kb on - strand, within CSW01_01195at 231.285 kb on + strand, within CSW01_01195at 231.293 kb on - strand, within CSW01_01195at 231.301 kb on - strand, within CSW01_01195at 231.327 kb on + strand, within CSW01_01195at 231.383 kb on + strand, within CSW01_01195at 231.428 kb on - strand, within CSW01_01195at 231.710 kb on - strand, within CSW01_01195

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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229,015 + CSW01_01185 0.13 +4.3
229,025 - CSW01_01185 0.14 +4.5
229,049 + CSW01_01185 0.17 +3.8
229,057 - CSW01_01185 0.17 +3.9
229,085 - CSW01_01185 0.20 +3.7
229,089 + CSW01_01185 0.20 +3.8
229,134 + CSW01_01185 0.25 +5.3
229,134 + CSW01_01185 0.25 +4.5
229,134 + CSW01_01185 0.25 +3.7
229,142 - CSW01_01185 0.26 +4.3
229,144 + CSW01_01185 0.26 +4.2
229,152 - CSW01_01185 0.26 +4.1
229,164 - CSW01_01185 0.28 +4.3
229,227 + CSW01_01185 0.34 +4.8
229,240 - CSW01_01185 0.35 +4.1
229,345 + CSW01_01185 0.45 +3.6
229,352 - CSW01_01185 0.46 +4.3
229,363 + CSW01_01185 0.47 +4.0
229,401 + CSW01_01185 0.50 +3.3
229,423 + CSW01_01185 0.53 +4.4
229,472 + CSW01_01185 0.57 +4.2
229,472 + CSW01_01185 0.57 +4.6
229,480 - CSW01_01185 0.58 +4.3
229,480 - CSW01_01185 0.58 +3.7
229,484 + CSW01_01185 0.58 +4.1
229,494 + CSW01_01185 0.59 +4.5
229,528 - CSW01_01185 0.63 +4.2
229,535 + CSW01_01185 0.63 +4.6
229,653 + CSW01_01185 0.75 +4.6
229,665 + CSW01_01185 0.76 +4.0
229,741 + CSW01_01185 0.83 +4.3
229,774 + CSW01_01185 0.86 +4.5
229,832 - +4.5
229,858 + -0.6
229,886 + +0.4
229,893 + -0.2
229,908 + +0.1
229,908 + +0.4
229,967 + -0.9
229,983 + +0.9
230,007 + -0.3
230,009 + +1.1
230,033 + +3.5
230,033 + +2.6
230,033 + +3.1
230,038 + +3.3
230,041 - +3.2
230,043 + +2.5
230,051 - +2.7
230,051 - +2.9
230,051 - +3.9
230,051 - +3.5
230,051 - +3.0
230,051 - +3.1
230,131 + CSW01_01190 0.20 +2.8
230,146 - CSW01_01190 0.22 +2.1
230,156 - CSW01_01190 0.23 +3.3
230,222 + CSW01_01190 0.32 +2.8
230,234 + CSW01_01190 0.33 +3.0
230,269 - CSW01_01190 0.38 +3.4
230,330 + CSW01_01190 0.45 +2.7
230,414 - CSW01_01190 0.56 +3.3
230,426 + CSW01_01190 0.58 +2.4
230,568 - CSW01_01190 0.76 +3.3
230,601 + CSW01_01190 0.80 +2.1
230,601 + CSW01_01190 0.80 +3.0
230,609 - CSW01_01190 0.81 +2.9
230,657 + CSW01_01190 0.87 +3.1
230,670 - CSW01_01190 0.89 +2.8
230,680 - +3.3
230,680 - +3.3
230,825 - -0.4
230,829 + -2.1
230,868 + +2.6
230,868 + -1.9
230,876 - +1.7
230,997 + CSW01_01195 0.19 +0.8
230,997 + CSW01_01195 0.19 +2.6
231,005 - CSW01_01195 0.19 +3.1
231,009 + CSW01_01195 0.20 +1.6
231,009 + CSW01_01195 0.20 -1.6
231,009 + CSW01_01195 0.20 +2.6
231,017 - CSW01_01195 0.20 +1.1
231,017 - CSW01_01195 0.20 -1.8
231,017 - CSW01_01195 0.20 +4.4
231,149 + CSW01_01195 0.33 +3.7
231,149 + CSW01_01195 0.33 +3.2
231,265 + CSW01_01195 0.43 -2.5
231,275 + CSW01_01195 0.44 +2.7
231,283 - CSW01_01195 0.45 +2.0
231,283 - CSW01_01195 0.45 +2.3
231,285 + CSW01_01195 0.45 -2.3
231,293 - CSW01_01195 0.46 +1.7
231,301 - CSW01_01195 0.47 +4.0
231,327 + CSW01_01195 0.49 +2.8
231,383 + CSW01_01195 0.54 +3.1
231,428 - CSW01_01195 0.59 +2.1
231,710 - CSW01_01195 0.85 +2.0

Or see this region's nucleotide sequence