Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01150

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01145 and CSW01_01150 are separated by 167 nucleotidesCSW01_01150 and CSW01_01155 are separated by 111 nucleotides CSW01_01145: CSW01_01145 - bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB, at 222,088 to 223,287 _01145 CSW01_01150: CSW01_01150 - methyl-accepting chemotaxis protein, at 223,455 to 225,149 _01150 CSW01_01155: CSW01_01155 - DNA repair protein RadC, at 225,261 to 225,935 _01155 Position (kb) 223 224 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 223.316 kb on + strandat 223.338 kb on + strandat 223.356 kb on + strandat 223.361 kb on + strandat 223.366 kb on - strandat 223.366 kb on - strandat 223.482 kb on + strandat 223.490 kb on - strandat 223.539 kb on + strandat 223.539 kb on + strandat 223.544 kb on + strandat 223.544 kb on + strandat 223.547 kb on - strandat 223.552 kb on - strandat 223.577 kb on - strandat 223.637 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.678 kb on + strand, within CSW01_01150at 223.777 kb on + strand, within CSW01_01150at 223.777 kb on + strand, within CSW01_01150at 223.795 kb on - strand, within CSW01_01150at 223.797 kb on - strand, within CSW01_01150at 223.813 kb on - strand, within CSW01_01150at 223.819 kb on - strand, within CSW01_01150at 223.833 kb on - strand, within CSW01_01150at 223.848 kb on + strand, within CSW01_01150at 223.944 kb on - strand, within CSW01_01150at 223.961 kb on + strand, within CSW01_01150at 224.033 kb on - strand, within CSW01_01150at 224.065 kb on - strand, within CSW01_01150at 224.133 kb on - strand, within CSW01_01150at 224.133 kb on - strand, within CSW01_01150at 224.158 kb on + strand, within CSW01_01150at 224.158 kb on + strand, within CSW01_01150at 224.166 kb on - strand, within CSW01_01150at 224.169 kb on + strand, within CSW01_01150at 224.178 kb on + strand, within CSW01_01150at 224.185 kb on + strand, within CSW01_01150at 224.185 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.276 kb on + strand, within CSW01_01150at 224.306 kb on + strand, within CSW01_01150at 224.319 kb on + strand, within CSW01_01150at 224.366 kb on - strand, within CSW01_01150at 224.382 kb on - strand, within CSW01_01150at 224.442 kb on + strand, within CSW01_01150at 224.447 kb on - strand, within CSW01_01150at 224.457 kb on - strand, within CSW01_01150at 224.471 kb on + strand, within CSW01_01150at 224.476 kb on + strand, within CSW01_01150at 224.540 kb on + strand, within CSW01_01150at 224.568 kb on + strand, within CSW01_01150at 224.601 kb on + strand, within CSW01_01150at 224.633 kb on + strand, within CSW01_01150at 224.702 kb on + strand, within CSW01_01150at 224.711 kb on + strand, within CSW01_01150at 224.724 kb on + strand, within CSW01_01150at 224.732 kb on - strand, within CSW01_01150at 224.737 kb on + strand, within CSW01_01150at 224.737 kb on + strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.745 kb on - strand, within CSW01_01150at 224.757 kb on + strand, within CSW01_01150at 224.769 kb on + strand, within CSW01_01150at 224.771 kb on + strand, within CSW01_01150at 224.781 kb on + strand, within CSW01_01150at 224.794 kb on - strand, within CSW01_01150at 224.799 kb on - strand, within CSW01_01150at 224.799 kb on - strand, within CSW01_01150at 224.821 kb on - strand, within CSW01_01150at 224.827 kb on + strand, within CSW01_01150at 224.834 kb on + strand, within CSW01_01150at 224.844 kb on + strand, within CSW01_01150at 224.847 kb on + strand, within CSW01_01150at 224.850 kb on - strand, within CSW01_01150at 224.856 kb on + strand, within CSW01_01150at 224.861 kb on + strand, within CSW01_01150at 224.861 kb on - strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.906 kb on + strand, within CSW01_01150at 224.915 kb on - strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.930 kb on + strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.938 kb on - strand, within CSW01_01150at 224.952 kb on - strand, within CSW01_01150at 224.954 kb on + strand, within CSW01_01150at 224.981 kb on - strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.064 kb on + strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.074 kb on + strandat 225.082 kb on - strandat 225.088 kb on + strandat 225.096 kb on - strandat 225.096 kb on - strandat 225.096 kb on - strandat 225.258 kb on + strandat 225.265 kb on + strandat 225.334 kb on - strand, within CSW01_01155at 225.337 kb on + strand, within CSW01_01155at 225.373 kb on + strand, within CSW01_01155at 225.379 kb on + strand, within CSW01_01155at 225.392 kb on + strand, within CSW01_01155at 225.395 kb on - strand, within CSW01_01155at 225.400 kb on - strand, within CSW01_01155at 225.440 kb on + strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.538 kb on - strand, within CSW01_01155at 225.555 kb on - strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.574 kb on + strand, within CSW01_01155at 225.632 kb on + strand, within CSW01_01155at 225.720 kb on - strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.806 kb on + strand, within CSW01_01155at 225.816 kb on + strand, within CSW01_01155at 225.821 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.853 kb on + strand, within CSW01_01155at 225.859 kb on - strand, within CSW01_01155at 225.910 kb on + strandat 225.934 kb on + strandat 225.934 kb on + strandat 225.942 kb on - strandat 225.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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223,316 + -2.6
223,338 + -1.6
223,356 + -2.0
223,361 + +0.6
223,366 - -0.0
223,366 - -3.2
223,482 + +0.1
223,490 - +1.2
223,539 + -1.0
223,539 + +0.1
223,544 + -2.8
223,544 + +0.5
223,547 - +1.4
223,552 - -2.8
223,577 - +1.4
223,637 + CSW01_01150 0.11 +1.2
223,671 + CSW01_01150 0.13 +0.5
223,671 + CSW01_01150 0.13 -0.6
223,671 + CSW01_01150 0.13 -0.3
223,678 + CSW01_01150 0.13 -0.2
223,777 + CSW01_01150 0.19 -2.1
223,777 + CSW01_01150 0.19 -3.4
223,795 - CSW01_01150 0.20 -1.1
223,797 - CSW01_01150 0.20 +0.5
223,813 - CSW01_01150 0.21 +0.5
223,819 - CSW01_01150 0.21 +0.3
223,833 - CSW01_01150 0.22 -0.9
223,848 + CSW01_01150 0.23 -2.5
223,944 - CSW01_01150 0.29 -3.4
223,961 + CSW01_01150 0.30 +0.5
224,033 - CSW01_01150 0.34 -2.0
224,065 - CSW01_01150 0.36 +0.8
224,133 - CSW01_01150 0.40 +2.0
224,133 - CSW01_01150 0.40 -1.6
224,158 + CSW01_01150 0.41 -1.6
224,158 + CSW01_01150 0.41 +1.0
224,166 - CSW01_01150 0.42 -0.2
224,169 + CSW01_01150 0.42 +0.1
224,178 + CSW01_01150 0.43 +0.2
224,185 + CSW01_01150 0.43 +0.7
224,185 + CSW01_01150 0.43 +1.3
224,231 + CSW01_01150 0.46 +1.0
224,231 + CSW01_01150 0.46 -3.0
224,231 + CSW01_01150 0.46 -3.0
224,231 + CSW01_01150 0.46 +2.2
224,231 + CSW01_01150 0.46 +0.1
224,239 - CSW01_01150 0.46 +0.8
224,239 - CSW01_01150 0.46 -0.4
224,239 - CSW01_01150 0.46 -0.7
224,276 + CSW01_01150 0.48 +0.4
224,306 + CSW01_01150 0.50 -1.6
224,319 + CSW01_01150 0.51 -3.2
224,366 - CSW01_01150 0.54 -2.0
224,382 - CSW01_01150 0.55 +1.2
224,442 + CSW01_01150 0.58 -0.7
224,447 - CSW01_01150 0.59 -4.2
224,457 - CSW01_01150 0.59 -2.3
224,471 + CSW01_01150 0.60 +0.9
224,476 + CSW01_01150 0.60 +0.8
224,540 + CSW01_01150 0.64 -0.5
224,568 + CSW01_01150 0.66 -0.9
224,601 + CSW01_01150 0.68 +0.3
224,633 + CSW01_01150 0.69 +0.4
224,702 + CSW01_01150 0.74 -0.1
224,711 + CSW01_01150 0.74 -2.8
224,724 + CSW01_01150 0.75 -3.9
224,732 - CSW01_01150 0.75 +0.0
224,737 + CSW01_01150 0.76 +0.9
224,737 + CSW01_01150 0.76 -0.8
224,745 - CSW01_01150 0.76 -2.6
224,745 - CSW01_01150 0.76 +0.4
224,745 - CSW01_01150 0.76 +0.1
224,745 - CSW01_01150 0.76 -3.4
224,757 + CSW01_01150 0.77 +1.2
224,769 + CSW01_01150 0.78 +0.5
224,771 + CSW01_01150 0.78 -4.6
224,781 + CSW01_01150 0.78 -0.2
224,794 - CSW01_01150 0.79 -1.0
224,799 - CSW01_01150 0.79 -2.9
224,799 - CSW01_01150 0.79 +0.6
224,821 - CSW01_01150 0.81 -0.5
224,827 + CSW01_01150 0.81 +0.6
224,834 + CSW01_01150 0.81 +1.3
224,844 + CSW01_01150 0.82 -0.2
224,847 + CSW01_01150 0.82 +0.8
224,850 - CSW01_01150 0.82 +0.8
224,856 + CSW01_01150 0.83 +0.2
224,861 + CSW01_01150 0.83 -1.9
224,861 - CSW01_01150 0.83 -0.0
224,906 + CSW01_01150 0.86 -0.7
224,906 + CSW01_01150 0.86 -3.3
224,906 + CSW01_01150 0.86 -3.4
224,915 - CSW01_01150 0.86 +1.2
224,930 + CSW01_01150 0.87 +0.4
224,930 + CSW01_01150 0.87 -0.0
224,930 + CSW01_01150 0.87 -2.0
224,938 - CSW01_01150 0.87 -1.4
224,938 - CSW01_01150 0.87 +0.2
224,938 - CSW01_01150 0.87 +0.1
224,938 - CSW01_01150 0.87 -0.4
224,938 - CSW01_01150 0.87 +1.1
224,938 - CSW01_01150 0.87 +0.4
224,952 - CSW01_01150 0.88 +0.3
224,954 + CSW01_01150 0.88 -1.8
224,981 - +0.9
225,064 + -0.0
225,064 + -3.8
225,064 + -1.2
225,064 + +1.3
225,064 + +1.1
225,064 + -0.6
225,064 + -0.4
225,064 + -3.0
225,064 + +1.0
225,064 + -1.7
225,064 + +1.5
225,064 + +1.2
225,064 + +1.2
225,064 + -1.0
225,064 + +1.0
225,064 + -0.5
225,064 + +0.0
225,064 + -0.4
225,072 - +0.5
225,072 - +0.3
225,072 - -2.9
225,072 - +1.3
225,072 - +0.4
225,072 - -3.8
225,072 - -2.0
225,072 - -1.4
225,072 - -1.9
225,072 - -2.4
225,072 - -0.7
225,072 - -3.9
225,072 - -4.2
225,072 - -2.4
225,072 - -1.6
225,072 - +1.0
225,072 - +0.8
225,072 - -1.6
225,072 - -3.2
225,072 - -2.9
225,072 - +0.1
225,072 - +1.1
225,072 - +0.1
225,072 - +0.0
225,072 - +1.4
225,072 - +1.5
225,072 - -0.4
225,072 - -1.0
225,072 - -1.8
225,072 - +0.5
225,072 - +0.7
225,074 + +0.0
225,082 - +0.2
225,088 + -0.3
225,096 - -0.4
225,096 - +0.4
225,096 - -3.0
225,258 + -2.5
225,265 + -2.4
225,334 - CSW01_01155 0.11 -3.2
225,337 + CSW01_01155 0.11 -4.5
225,373 + CSW01_01155 0.17 +1.8
225,379 + CSW01_01155 0.17 -0.2
225,392 + CSW01_01155 0.19 -3.4
225,395 - CSW01_01155 0.20 -2.8
225,400 - CSW01_01155 0.21 +0.9
225,440 + CSW01_01155 0.27 +0.5
225,448 - CSW01_01155 0.28 -3.3
225,448 - CSW01_01155 0.28 -2.8
225,448 - CSW01_01155 0.28 +0.1
225,448 - CSW01_01155 0.28 -3.0
225,477 + CSW01_01155 0.32 -0.6
225,477 + CSW01_01155 0.32 +1.2
225,477 + CSW01_01155 0.32 -0.7
225,477 + CSW01_01155 0.32 +0.8
225,485 - CSW01_01155 0.33 -0.3
225,485 - CSW01_01155 0.33 +0.3
225,485 - CSW01_01155 0.33 +3.0
225,485 - CSW01_01155 0.33 -0.2
225,513 + CSW01_01155 0.37 -2.4
225,513 + CSW01_01155 0.37 -3.4
225,530 + CSW01_01155 0.40 -0.2
225,530 + CSW01_01155 0.40 +0.8
225,530 + CSW01_01155 0.40 +0.1
225,538 - CSW01_01155 0.41 +0.9
225,555 - CSW01_01155 0.44 +0.7
225,559 + CSW01_01155 0.44 +0.9
225,559 + CSW01_01155 0.44 -3.9
225,564 + CSW01_01155 0.45 -2.8
225,564 + CSW01_01155 0.45 +1.2
225,564 + CSW01_01155 0.45 -2.9
225,564 + CSW01_01155 0.45 +1.2
225,564 + CSW01_01155 0.45 +0.2
225,564 + CSW01_01155 0.45 +0.3
225,567 - CSW01_01155 0.45 -0.6
225,567 - CSW01_01155 0.45 -1.5
225,569 + CSW01_01155 0.46 -0.3
225,569 + CSW01_01155 0.46 -0.6
225,572 - CSW01_01155 0.46 -2.8
225,572 - CSW01_01155 0.46 -3.4
225,572 - CSW01_01155 0.46 +0.5
225,572 - CSW01_01155 0.46 +0.2
225,574 + CSW01_01155 0.46 +0.8
225,632 + CSW01_01155 0.55 +0.6
225,720 - CSW01_01155 0.68 +1.3
225,749 + CSW01_01155 0.72 -1.6
225,749 + CSW01_01155 0.72 -2.3
225,757 - CSW01_01155 0.73 -0.0
225,757 - CSW01_01155 0.73 +1.4
225,757 - CSW01_01155 0.73 -0.6
225,757 - CSW01_01155 0.73 +0.5
225,806 + CSW01_01155 0.81 +0.4
225,816 + CSW01_01155 0.82 -3.8
225,821 + CSW01_01155 0.83 +1.3
225,829 + CSW01_01155 0.84 +1.5
225,829 + CSW01_01155 0.84 +0.7
225,853 + CSW01_01155 0.88 -0.6
225,859 - CSW01_01155 0.89 -0.6
225,910 + -2.4
225,934 + +0.1
225,934 + -4.1
225,942 - +1.9
225,948 - -1.3

Or see this region's nucleotide sequence