Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00820 and CSW01_00825 are separated by 108 nucleotides CSW01_00825 and CSW01_00830 are separated by 47 nucleotides CSW01_00830 and CSW01_00835 are separated by 110 nucleotides CSW01_00835 and CSW01_00840 are separated by 137 nucleotides
CSW01_00820: CSW01_00820 - 23S ribosomal RNA, at 153,020 to 155,935
_00820
CSW01_00825: CSW01_00825 - 5S ribosomal RNA, at 156,044 to 156,159
_00825
CSW01_00830: CSW01_00830 - tRNA-Ser, at 156,207 to 156,297
_00830
CSW01_00835: CSW01_00835 - HTH-type transcriptional activator IlvY, at 156,408 to 157,304
_00835
CSW01_00840: CSW01_00840 - ketol-acid reductoisomerase, at 157,442 to 158,926
_00840
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 156.008 kb on - strand at 156.511 kb on + strand, within CSW01_00835 at 156.699 kb on - strand, within CSW01_00835 at 156.706 kb on + strand, within CSW01_00835 at 156.722 kb on - strand, within CSW01_00835 at 156.765 kb on - strand, within CSW01_00835 at 156.770 kb on + strand, within CSW01_00835 at 156.925 kb on + strand, within CSW01_00835 at 156.925 kb on + strand, within CSW01_00835 at 156.980 kb on + strand, within CSW01_00835 at 156.988 kb on - strand, within CSW01_00835 at 156.992 kb on + strand, within CSW01_00835 at 157.017 kb on + strand, within CSW01_00835 at 157.025 kb on - strand, within CSW01_00835 at 157.091 kb on - strand, within CSW01_00835 at 157.136 kb on + strand, within CSW01_00835 at 157.136 kb on + strand, within CSW01_00835 at 157.141 kb on + strand, within CSW01_00835 at 157.142 kb on - strand, within CSW01_00835 at 157.142 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.144 kb on - strand, within CSW01_00835 at 157.220 kb on + strand at 157.265 kb on + strand at 157.374 kb on + strand at 157.469 kb on - strand at 157.595 kb on - strand, within CSW01_00840 at 157.599 kb on + strand, within CSW01_00840 at 157.606 kb on - strand, within CSW01_00840 at 157.642 kb on + strand, within CSW01_00840 at 157.703 kb on + strand, within CSW01_00840 at 157.721 kb on - strand, within CSW01_00840 at 157.771 kb on + strand, within CSW01_00840 at 157.782 kb on - strand, within CSW01_00840 at 157.820 kb on + strand, within CSW01_00840 at 157.823 kb on - strand, within CSW01_00840 at 157.828 kb on - strand, within CSW01_00840 at 157.828 kb on - strand, within CSW01_00840 at 157.828 kb on - strand, within CSW01_00840 at 157.828 kb on - strand, within CSW01_00840 at 157.828 kb on - strand, within CSW01_00840 at 157.833 kb on - strand, within CSW01_00840 at 157.894 kb on - strand, within CSW01_00840 at 157.939 kb on - strand, within CSW01_00840 at 158.000 kb on + strand, within CSW01_00840 at 158.001 kb on - strand, within CSW01_00840 at 158.025 kb on - strand, within CSW01_00840 at 158.136 kb on + strand, within CSW01_00840 at 158.247 kb on + strand, within CSW01_00840 at 158.255 kb on - strand, within CSW01_00840 at 158.272 kb on + strand, within CSW01_00840 at 158.272 kb on + strand, within CSW01_00840 at 158.272 kb on + strand, within CSW01_00840 at 158.272 kb on + strand, within CSW01_00840 at 158.280 kb on - strand, within CSW01_00840 at 158.280 kb on - strand, within CSW01_00840 at 158.280 kb on - strand, within CSW01_00840 at 158.303 kb on - strand, within CSW01_00840 at 158.303 kb on - strand, within CSW01_00840
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 156,008 - +0.4 156,511 + CSW01_00835 0.11 -2.4 156,699 - CSW01_00835 0.32 +2.1 156,706 + CSW01_00835 0.33 -3.2 156,722 - CSW01_00835 0.35 +0.5 156,765 - CSW01_00835 0.40 -0.4 156,770 + CSW01_00835 0.40 +0.1 156,925 + CSW01_00835 0.58 +0.7 156,925 + CSW01_00835 0.58 -2.2 156,980 + CSW01_00835 0.64 -2.3 156,988 - CSW01_00835 0.65 -1.5 156,992 + CSW01_00835 0.65 +0.0 157,017 + CSW01_00835 0.68 +0.2 157,025 - CSW01_00835 0.69 -0.3 157,091 - CSW01_00835 0.76 -0.6 157,136 + CSW01_00835 0.81 -0.1 157,136 + CSW01_00835 0.81 -0.2 157,141 + CSW01_00835 0.82 -4.0 157,142 - CSW01_00835 0.82 +0.3 157,142 - CSW01_00835 0.82 +1.4 157,144 - CSW01_00835 0.82 -0.7 157,144 - CSW01_00835 0.82 -0.0 157,144 - CSW01_00835 0.82 -2.4 157,144 - CSW01_00835 0.82 +0.7 157,220 + -3.3 157,265 + +0.4 157,374 + +1.4 157,469 - -1.7 157,595 - CSW01_00840 0.10 -3.6 157,599 + CSW01_00840 0.11 +0.1 157,606 - CSW01_00840 0.11 +1.3 157,642 + CSW01_00840 0.13 -0.2 157,703 + CSW01_00840 0.18 -0.9 157,721 - CSW01_00840 0.19 -0.4 157,771 + CSW01_00840 0.22 +0.4 157,782 - CSW01_00840 0.23 +0.9 157,820 + CSW01_00840 0.25 -2.1 157,823 - CSW01_00840 0.26 +1.8 157,828 - CSW01_00840 0.26 +0.8 157,828 - CSW01_00840 0.26 -3.4 157,828 - CSW01_00840 0.26 +2.5 157,828 - CSW01_00840 0.26 +1.7 157,828 - CSW01_00840 0.26 +1.0 157,833 - CSW01_00840 0.26 +3.3 157,894 - CSW01_00840 0.30 +0.3 157,939 - CSW01_00840 0.33 -4.3 158,000 + CSW01_00840 0.38 +1.1 158,001 - CSW01_00840 0.38 +0.5 158,025 - CSW01_00840 0.39 -0.5 158,136 + CSW01_00840 0.47 -1.8 158,247 + CSW01_00840 0.54 -0.8 158,255 - CSW01_00840 0.55 -0.3 158,272 + CSW01_00840 0.56 -0.1 158,272 + CSW01_00840 0.56 -2.6 158,272 + CSW01_00840 0.56 +0.7 158,272 + CSW01_00840 0.56 +0.3 158,280 - CSW01_00840 0.56 +1.1 158,280 - CSW01_00840 0.56 -1.2 158,280 - CSW01_00840 0.56 -1.3 158,303 - CSW01_00840 0.58 +1.3 158,303 - CSW01_00840 0.58 -0.2
Or see this region's nucleotide sequence