Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00520

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00505 and CSW01_00510 are separated by 0 nucleotidesCSW01_00510 and CSW01_00515 are separated by 22 nucleotidesCSW01_00515 and CSW01_00520 are separated by 70 nucleotidesCSW01_00520 and CSW01_00525 are separated by 119 nucleotides CSW01_00505: CSW01_00505 - 4-hydroxybenzoate octaprenyltransferase, at 93,465 to 94,319 _00505 CSW01_00510: CSW01_00510 - chorismate lyase, at 94,320 to 94,871 _00510 CSW01_00515: CSW01_00515 - hypothetical protein, at 94,894 to 94,992 _00515 CSW01_00520: CSW01_00520 - flagellar basal body-associated protein FliL, at 95,063 to 95,473 _00520 CSW01_00525: CSW01_00525 - methyl-accepting chemotaxis protein, at 95,593 to 97,572 _00525 Position (kb) 95 96Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 94.325 kb on - strandat 94.336 kb on + strandat 94.339 kb on - strandat 94.389 kb on - strand, within CSW01_00510at 94.413 kb on + strand, within CSW01_00510at 94.413 kb on + strand, within CSW01_00510at 94.421 kb on - strand, within CSW01_00510at 94.421 kb on - strand, within CSW01_00510at 94.421 kb on - strand, within CSW01_00510at 94.435 kb on + strand, within CSW01_00510at 94.471 kb on + strand, within CSW01_00510at 94.488 kb on - strand, within CSW01_00510at 94.498 kb on - strand, within CSW01_00510at 94.567 kb on - strand, within CSW01_00510at 94.568 kb on - strand, within CSW01_00510at 94.568 kb on - strand, within CSW01_00510at 94.614 kb on + strand, within CSW01_00510at 94.628 kb on + strand, within CSW01_00510at 94.628 kb on + strand, within CSW01_00510at 94.628 kb on + strand, within CSW01_00510at 94.628 kb on + strand, within CSW01_00510at 94.631 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.636 kb on - strand, within CSW01_00510at 94.659 kb on + strand, within CSW01_00510at 94.674 kb on - strand, within CSW01_00510at 94.720 kb on - strand, within CSW01_00510at 94.767 kb on - strand, within CSW01_00510at 94.821 kb on + strandat 94.829 kb on - strandat 94.839 kb on - strandat 94.891 kb on + strandat 94.960 kb on - strand, within CSW01_00515at 95.071 kb on + strandat 95.212 kb on + strand, within CSW01_00520at 95.249 kb on - strand, within CSW01_00520at 95.267 kb on - strand, within CSW01_00520at 95.292 kb on - strand, within CSW01_00520at 95.292 kb on - strand, within CSW01_00520at 95.310 kb on + strand, within CSW01_00520at 95.395 kb on + strand, within CSW01_00520at 95.427 kb on - strand, within CSW01_00520at 95.427 kb on - strand, within CSW01_00520at 95.432 kb on - strand, within CSW01_00520at 95.481 kb on + strandat 95.481 kb on + strandat 95.489 kb on - strandat 95.546 kb on - strandat 95.588 kb on - strandat 95.628 kb on + strandat 95.643 kb on - strandat 95.643 kb on - strandat 95.661 kb on - strandat 95.751 kb on + strandat 95.759 kb on - strandat 95.761 kb on - strandat 95.762 kb on + strandat 95.762 kb on + strandat 95.770 kb on - strandat 95.770 kb on - strandat 95.801 kb on + strand, within CSW01_00525at 95.809 kb on - strand, within CSW01_00525at 95.815 kb on + strand, within CSW01_00525at 95.816 kb on + strand, within CSW01_00525at 95.911 kb on - strand, within CSW01_00525at 95.978 kb on + strand, within CSW01_00525at 95.991 kb on + strand, within CSW01_00525at 96.098 kb on + strand, within CSW01_00525at 96.106 kb on - strand, within CSW01_00525at 96.106 kb on - strand, within CSW01_00525at 96.116 kb on - strand, within CSW01_00525at 96.121 kb on - strand, within CSW01_00525at 96.123 kb on + strand, within CSW01_00525at 96.159 kb on - strand, within CSW01_00525at 96.159 kb on - strand, within CSW01_00525at 96.177 kb on + strand, within CSW01_00525at 96.303 kb on + strand, within CSW01_00525at 96.311 kb on - strand, within CSW01_00525at 96.311 kb on - strand, within CSW01_00525at 96.340 kb on - strand, within CSW01_00525at 96.365 kb on - strand, within CSW01_00525at 96.391 kb on + strand, within CSW01_00525at 96.391 kb on + strand, within CSW01_00525at 96.391 kb on + strand, within CSW01_00525at 96.391 kb on + strand, within CSW01_00525at 96.391 kb on + strand, within CSW01_00525at 96.399 kb on + strand, within CSW01_00525at 96.399 kb on - strand, within CSW01_00525at 96.399 kb on - strand, within CSW01_00525at 96.399 kb on - strand, within CSW01_00525at 96.406 kb on + strand, within CSW01_00525at 96.426 kb on + strand, within CSW01_00525at 96.434 kb on - strand, within CSW01_00525at 96.450 kb on + strand, within CSW01_00525

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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94,325 - -0.4
94,336 + -3.6
94,339 - +2.0
94,389 - CSW01_00510 0.12 -0.5
94,413 + CSW01_00510 0.17 -3.4
94,413 + CSW01_00510 0.17 -3.8
94,421 - CSW01_00510 0.18 -1.6
94,421 - CSW01_00510 0.18 +0.1
94,421 - CSW01_00510 0.18 -3.2
94,435 + CSW01_00510 0.21 -4.3
94,471 + CSW01_00510 0.27 +0.8
94,488 - CSW01_00510 0.30 +1.2
94,498 - CSW01_00510 0.32 -1.4
94,567 - CSW01_00510 0.45 -0.2
94,568 - CSW01_00510 0.45 -0.1
94,568 - CSW01_00510 0.45 +0.2
94,614 + CSW01_00510 0.53 -4.2
94,628 + CSW01_00510 0.56 -5.0
94,628 + CSW01_00510 0.56 -2.6
94,628 + CSW01_00510 0.56 -2.5
94,628 + CSW01_00510 0.56 -3.4
94,631 - CSW01_00510 0.56 +1.7
94,636 - CSW01_00510 0.57 +2.4
94,636 - CSW01_00510 0.57 +0.4
94,636 - CSW01_00510 0.57 +0.5
94,636 - CSW01_00510 0.57 +1.1
94,636 - CSW01_00510 0.57 -4.3
94,636 - CSW01_00510 0.57 -3.4
94,659 + CSW01_00510 0.61 -3.6
94,674 - CSW01_00510 0.64 +0.9
94,720 - CSW01_00510 0.72 +1.7
94,767 - CSW01_00510 0.81 -0.2
94,821 + -4.7
94,829 - -3.7
94,839 - -0.9
94,891 + +1.2
94,960 - CSW01_00515 0.67 +0.5
95,071 + +2.2
95,212 + CSW01_00520 0.36 +1.3
95,249 - CSW01_00520 0.45 +0.7
95,267 - CSW01_00520 0.50 -1.2
95,292 - CSW01_00520 0.56 +1.7
95,292 - CSW01_00520 0.56 +1.1
95,310 + CSW01_00520 0.60 -0.9
95,395 + CSW01_00520 0.81 -2.7
95,427 - CSW01_00520 0.89 -0.3
95,427 - CSW01_00520 0.89 -2.2
95,432 - CSW01_00520 0.90 +1.3
95,481 + +0.1
95,481 + -0.4
95,489 - -1.0
95,546 - +0.1
95,588 - -1.1
95,628 + +1.9
95,643 - -1.5
95,643 - +0.0
95,661 - -3.4
95,751 + +1.8
95,759 - -3.5
95,761 - -3.4
95,762 + -0.2
95,762 + +1.3
95,770 - -0.3
95,770 - -1.4
95,801 + CSW01_00525 0.11 +0.5
95,809 - CSW01_00525 0.11 +0.8
95,815 + CSW01_00525 0.11 +0.6
95,816 + CSW01_00525 0.11 -0.6
95,911 - CSW01_00525 0.16 -0.2
95,978 + CSW01_00525 0.19 +0.3
95,991 + CSW01_00525 0.20 +0.5
96,098 + CSW01_00525 0.26 +1.8
96,106 - CSW01_00525 0.26 -0.7
96,106 - CSW01_00525 0.26 -3.0
96,116 - CSW01_00525 0.26 -2.9
96,121 - CSW01_00525 0.27 +0.1
96,123 + CSW01_00525 0.27 +0.8
96,159 - CSW01_00525 0.29 -3.3
96,159 - CSW01_00525 0.29 +0.4
96,177 + CSW01_00525 0.29 -0.0
96,303 + CSW01_00525 0.36 -0.8
96,311 - CSW01_00525 0.36 -1.7
96,311 - CSW01_00525 0.36 -0.1
96,340 - CSW01_00525 0.38 -0.9
96,365 - CSW01_00525 0.39 -0.6
96,391 + CSW01_00525 0.40 +0.0
96,391 + CSW01_00525 0.40 -3.3
96,391 + CSW01_00525 0.40 -1.9
96,391 + CSW01_00525 0.40 -0.1
96,391 + CSW01_00525 0.40 +1.1
96,399 + CSW01_00525 0.41 -0.2
96,399 - CSW01_00525 0.41 +0.6
96,399 - CSW01_00525 0.41 +1.2
96,399 - CSW01_00525 0.41 -0.9
96,406 + CSW01_00525 0.41 +0.2
96,426 + CSW01_00525 0.42 +0.6
96,434 - CSW01_00525 0.42 -1.8
96,450 + CSW01_00525 0.43 +0.5

Or see this region's nucleotide sequence