Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00230

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00225 and CSW01_00230 are separated by 55 nucleotidesCSW01_00230 and CSW01_00235 are separated by 17 nucleotidesCSW01_00235 and CSW01_00240 are separated by 91 nucleotides CSW01_00225: CSW01_00225 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 41,998 to 43,278 _00225 CSW01_00230: CSW01_00230 - methionyl-tRNA formyltransferase, at 43,334 to 44,281 _00230 CSW01_00235: CSW01_00235 - peptide deformylase, at 44,299 to 44,808 _00235 CSW01_00240: CSW01_00240 - LysM peptidoglycan-binding domain-containing protein, at 44,900 to 46,075 _00240 Position (kb) 43 44 45Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 42.337 kb on + strand, within CSW01_00225at 42.363 kb on + strand, within CSW01_00225at 42.391 kb on - strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.428 kb on - strand, within CSW01_00225at 42.434 kb on + strand, within CSW01_00225at 42.442 kb on - strand, within CSW01_00225at 42.483 kb on - strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.563 kb on + strand, within CSW01_00225at 42.566 kb on - strand, within CSW01_00225at 42.568 kb on + strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.577 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.600 kb on - strand, within CSW01_00225at 42.712 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.744 kb on - strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.821 kb on - strand, within CSW01_00225at 42.823 kb on - strand, within CSW01_00225at 42.865 kb on - strand, within CSW01_00225at 42.900 kb on - strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.919 kb on - strand, within CSW01_00225at 42.922 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.954 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.970 kb on + strand, within CSW01_00225at 42.985 kb on - strand, within CSW01_00225at 43.033 kb on + strand, within CSW01_00225at 43.040 kb on - strand, within CSW01_00225at 43.132 kb on + strand, within CSW01_00225at 43.208 kb on + strandat 43.208 kb on + strandat 43.208 kb on + strandat 43.208 kb on + strandat 43.216 kb on - strandat 43.216 kb on - strandat 43.216 kb on - strandat 43.233 kb on - strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.362 kb on - strandat 44.295 kb on - strandat 44.420 kb on - strand, within CSW01_00235at 44.449 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.498 kb on - strand, within CSW01_00235at 44.513 kb on - strand, within CSW01_00235at 44.515 kb on - strand, within CSW01_00235at 44.547 kb on - strand, within CSW01_00235at 44.585 kb on - strand, within CSW01_00235at 44.770 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.839 kb on - strandat 44.849 kb on - strandat 44.886 kb on - strandat 44.944 kb on + strandat 44.962 kb on - strandat 44.986 kb on + strandat 44.988 kb on + strandat 45.001 kb on - strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.006 kb on - strandat 45.006 kb on - strandat 45.006 kb on - strandat 45.010 kb on + strandat 45.011 kb on - strandat 45.011 kb on - strandat 45.016 kb on - strandat 45.018 kb on - strand, within CSW01_00240at 45.061 kb on + strand, within CSW01_00240at 45.061 kb on - strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.069 kb on - strand, within CSW01_00240at 45.073 kb on + strand, within CSW01_00240at 45.073 kb on + strand, within CSW01_00240at 45.081 kb on - strand, within CSW01_00240at 45.087 kb on - strand, within CSW01_00240at 45.087 kb on - strand, within CSW01_00240at 45.110 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.127 kb on + strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.205 kb on + strand, within CSW01_00240at 45.205 kb on + strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.234 kb on + strand, within CSW01_00240at 45.234 kb on + strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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42,337 + CSW01_00225 0.26 -0.2
42,363 + CSW01_00225 0.28 +1.0
42,391 - CSW01_00225 0.31 -0.2
42,405 + CSW01_00225 0.32 -2.4
42,405 + CSW01_00225 0.32 -0.4
42,405 + CSW01_00225 0.32 -2.5
42,405 + CSW01_00225 0.32 +1.5
42,405 + CSW01_00225 0.32 -1.8
42,413 - CSW01_00225 0.32 -1.6
42,413 - CSW01_00225 0.32 -3.5
42,413 - CSW01_00225 0.32 +0.4
42,413 - CSW01_00225 0.32 -0.5
42,413 - CSW01_00225 0.32 +1.4
42,413 - CSW01_00225 0.32 +0.4
42,413 - CSW01_00225 0.32 +1.8
42,428 - CSW01_00225 0.34 -0.1
42,434 + CSW01_00225 0.34 -2.4
42,442 - CSW01_00225 0.35 +1.3
42,483 - CSW01_00225 0.38 +0.9
42,558 + CSW01_00225 0.44 -0.8
42,558 + CSW01_00225 0.44 -2.4
42,563 + CSW01_00225 0.44 +1.9
42,566 - CSW01_00225 0.44 -1.8
42,568 + CSW01_00225 0.44 +0.7
42,576 - CSW01_00225 0.45 -1.1
42,576 - CSW01_00225 0.45 +0.2
42,577 + CSW01_00225 0.45 -0.0
42,592 + CSW01_00225 0.46 -0.5
42,592 + CSW01_00225 0.46 -1.5
42,592 + CSW01_00225 0.46 -0.4
42,600 - CSW01_00225 0.47 -2.4
42,712 + CSW01_00225 0.56 +1.0
42,719 + CSW01_00225 0.56 +0.2
42,719 + CSW01_00225 0.56 +2.7
42,727 - CSW01_00225 0.57 -2.6
42,727 - CSW01_00225 0.57 -0.8
42,727 - CSW01_00225 0.57 -1.9
42,727 - CSW01_00225 0.57 +0.6
42,744 - CSW01_00225 0.58 -0.0
42,810 + CSW01_00225 0.63 +2.2
42,810 + CSW01_00225 0.63 -1.5
42,810 + CSW01_00225 0.63 -3.3
42,810 + CSW01_00225 0.63 +2.8
42,810 + CSW01_00225 0.63 -1.5
42,810 + CSW01_00225 0.63 -4.4
42,810 + CSW01_00225 0.63 +1.3
42,810 + CSW01_00225 0.63 +0.6
42,815 + CSW01_00225 0.64 -3.5
42,815 + CSW01_00225 0.64 -3.3
42,815 + CSW01_00225 0.64 -0.7
42,815 + CSW01_00225 0.64 +0.2
42,818 - CSW01_00225 0.64 +0.0
42,818 - CSW01_00225 0.64 -2.8
42,818 - CSW01_00225 0.64 +1.5
42,818 - CSW01_00225 0.64 +0.8
42,818 - CSW01_00225 0.64 -1.7
42,818 - CSW01_00225 0.64 +0.6
42,818 - CSW01_00225 0.64 -0.3
42,818 - CSW01_00225 0.64 +1.3
42,818 - CSW01_00225 0.64 +0.3
42,818 - CSW01_00225 0.64 -4.9
42,818 - CSW01_00225 0.64 +1.1
42,818 - CSW01_00225 0.64 +1.0
42,818 - CSW01_00225 0.64 -3.5
42,818 - CSW01_00225 0.64 +0.7
42,821 - CSW01_00225 0.64 -3.5
42,823 - CSW01_00225 0.64 +0.4
42,865 - CSW01_00225 0.68 +0.5
42,900 - CSW01_00225 0.70 -0.0
42,917 + CSW01_00225 0.72 -1.1
42,917 + CSW01_00225 0.72 +0.6
42,919 - CSW01_00225 0.72 +1.0
42,922 + CSW01_00225 0.72 +0.7
42,951 + CSW01_00225 0.74 -0.9
42,951 + CSW01_00225 0.74 -3.3
42,951 + CSW01_00225 0.74 -0.1
42,951 + CSW01_00225 0.74 +1.0
42,951 + CSW01_00225 0.74 -0.6
42,951 + CSW01_00225 0.74 +0.2
42,954 - CSW01_00225 0.75 +1.7
42,959 - CSW01_00225 0.75 +0.9
42,959 - CSW01_00225 0.75 -4.4
42,959 - CSW01_00225 0.75 +0.5
42,959 - CSW01_00225 0.75 -0.3
42,970 + CSW01_00225 0.76 -0.4
42,985 - CSW01_00225 0.77 +0.1
43,033 + CSW01_00225 0.81 +0.7
43,040 - CSW01_00225 0.81 -2.4
43,132 + CSW01_00225 0.89 +1.5
43,208 + +0.8
43,208 + +0.5
43,208 + +0.6
43,208 + +1.9
43,216 - +0.8
43,216 - +1.1
43,216 - +0.8
43,233 - -2.6
43,319 + -2.5
43,319 + +1.1
43,319 + -2.6
43,362 - -2.1
44,295 - +0.3
44,420 - CSW01_00235 0.24 -3.4
44,449 - CSW01_00235 0.29 -0.0
44,463 - CSW01_00235 0.32 +1.3
44,463 - CSW01_00235 0.32 +0.9
44,463 - CSW01_00235 0.32 +0.7
44,463 - CSW01_00235 0.32 +0.8
44,463 - CSW01_00235 0.32 -2.5
44,498 - CSW01_00235 0.39 +1.9
44,513 - CSW01_00235 0.42 -1.8
44,515 - CSW01_00235 0.42 -1.8
44,547 - CSW01_00235 0.49 -1.3
44,585 - CSW01_00235 0.56 +1.3
44,770 - -1.1
44,828 - -0.6
44,828 - +0.8
44,828 - -0.8
44,828 - -0.8
44,828 - +0.2
44,839 - -2.5
44,849 - -2.3
44,886 - -1.5
44,944 + -2.1
44,962 - -0.5
44,986 + -0.9
44,988 + +0.8
45,001 - -0.4
45,003 + +0.7
45,003 + -0.5
45,003 + -1.8
45,003 + -1.8
45,006 - -0.5
45,006 - +0.8
45,006 - -0.5
45,010 + -3.2
45,011 - +1.9
45,011 - +2.0
45,016 - +0.4
45,018 - CSW01_00240 0.10 -4.6
45,061 + CSW01_00240 0.14 -3.3
45,061 - CSW01_00240 0.14 +0.5
45,063 + CSW01_00240 0.14 -0.2
45,063 + CSW01_00240 0.14 -0.7
45,063 + CSW01_00240 0.14 -2.0
45,063 + CSW01_00240 0.14 +2.1
45,063 + CSW01_00240 0.14 +0.4
45,069 - CSW01_00240 0.14 +1.3
45,073 + CSW01_00240 0.15 -1.1
45,073 + CSW01_00240 0.15 -2.7
45,081 - CSW01_00240 0.15 -1.9
45,087 - CSW01_00240 0.16 -1.0
45,087 - CSW01_00240 0.16 -0.2
45,110 + CSW01_00240 0.18 +0.2
45,120 + CSW01_00240 0.19 -1.9
45,120 + CSW01_00240 0.19 -0.5
45,120 + CSW01_00240 0.19 -0.6
45,120 + CSW01_00240 0.19 -0.2
45,120 + CSW01_00240 0.19 -2.6
45,120 + CSW01_00240 0.19 +2.1
45,120 + CSW01_00240 0.19 -3.6
45,127 + CSW01_00240 0.19 +0.4
45,128 - CSW01_00240 0.19 -0.3
45,128 - CSW01_00240 0.19 +1.0
45,128 - CSW01_00240 0.19 +0.2
45,128 - CSW01_00240 0.19 -4.1
45,128 - CSW01_00240 0.19 -0.1
45,128 - CSW01_00240 0.19 -0.7
45,128 - CSW01_00240 0.19 +0.1
45,128 - CSW01_00240 0.19 -0.3
45,128 - CSW01_00240 0.19 +1.0
45,128 - CSW01_00240 0.19 -0.1
45,128 - CSW01_00240 0.19 -0.2
45,128 - CSW01_00240 0.19 +0.9
45,128 - CSW01_00240 0.19 +0.7
45,128 - CSW01_00240 0.19 +0.7
45,128 - CSW01_00240 0.19 -0.3
45,128 - CSW01_00240 0.19 +1.2
45,128 - CSW01_00240 0.19 -3.5
45,128 - CSW01_00240 0.19 +1.9
45,128 - CSW01_00240 0.19 -0.4
45,128 - CSW01_00240 0.19 -2.6
45,128 - CSW01_00240 0.19 +0.2
45,128 - CSW01_00240 0.19 -1.6
45,132 + CSW01_00240 0.20 +0.8
45,132 + CSW01_00240 0.20 +0.6
45,132 + CSW01_00240 0.20 +1.2
45,132 + CSW01_00240 0.20 +0.9
45,140 - CSW01_00240 0.20 +1.2
45,140 - CSW01_00240 0.20 -1.0
45,140 - CSW01_00240 0.20 +0.1
45,205 + CSW01_00240 0.26 -0.1
45,205 + CSW01_00240 0.26 -4.2
45,213 - CSW01_00240 0.27 -0.8
45,213 - CSW01_00240 0.27 -0.2
45,213 - CSW01_00240 0.27 -1.0
45,224 + CSW01_00240 0.28 -0.3
45,224 + CSW01_00240 0.28 -1.1
45,224 + CSW01_00240 0.28 +0.1
45,224 + CSW01_00240 0.28 -0.8
45,224 + CSW01_00240 0.28 +1.4
45,234 + CSW01_00240 0.28 +0.4
45,234 + CSW01_00240 0.28 -2.6
45,242 - CSW01_00240 0.29 +0.4
45,242 - CSW01_00240 0.29 -0.8
45,242 - CSW01_00240 0.29 -0.1
45,242 - CSW01_00240 0.29 -3.6
45,242 - CSW01_00240 0.29 +2.2

Or see this region's nucleotide sequence