Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_385

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_384 and Ac3H11_385 are separated by 76 nucleotidesAc3H11_385 and Ac3H11_386 are separated by 100 nucleotides Ac3H11_384 - possible endonuclease/exonuclease/phosphatase family protein, at 63,343 to 64,386 _384 Ac3H11_385 - Nucleoside-diphosphate-sugar epimerases, at 64,463 to 65,023 _385 Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935 _386 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.605 kb on + strand, within Ac3H11_384at 63.605 kb on + strand, within Ac3H11_384at 63.742 kb on + strand, within Ac3H11_384at 63.742 kb on + strand, within Ac3H11_384at 63.742 kb on + strand, within Ac3H11_384at 63.742 kb on + strand, within Ac3H11_384at 63.743 kb on - strand, within Ac3H11_384at 63.743 kb on - strand, within Ac3H11_384at 63.743 kb on - strandat 63.743 kb on - strand, within Ac3H11_384at 64.036 kb on + strand, within Ac3H11_384at 64.140 kb on - strand, within Ac3H11_384at 64.140 kb on - strand, within Ac3H11_384at 64.277 kb on + strand, within Ac3H11_384at 64.277 kb on + strand, within Ac3H11_384at 64.277 kb on + strand, within Ac3H11_384at 64.277 kb on + strand, within Ac3H11_384at 64.278 kb on - strand, within Ac3H11_384at 64.278 kb on - strand, within Ac3H11_384at 64.278 kb on - strand, within Ac3H11_384at 64.295 kb on + strandat 64.295 kb on + strandat 64.296 kb on - strandat 64.296 kb on - strandat 64.296 kb on - strandat 64.412 kb on - strandat 64.520 kb on + strand, within Ac3H11_385at 64.520 kb on + strand, within Ac3H11_385at 64.520 kb on + strand, within Ac3H11_385at 64.521 kb on - strand, within Ac3H11_385at 64.569 kb on + strand, within Ac3H11_385at 64.569 kb on + strand, within Ac3H11_385at 64.569 kb on + strand, within Ac3H11_385at 64.569 kb on + strand, within Ac3H11_385at 64.570 kb on - strand, within Ac3H11_385at 64.570 kb on - strand, within Ac3H11_385at 64.570 kb on - strand, within Ac3H11_385at 64.684 kb on + strand, within Ac3H11_385at 64.749 kb on + strand, within Ac3H11_385at 64.749 kb on + strand, within Ac3H11_385at 64.749 kb on + strand, within Ac3H11_385at 64.750 kb on - strand, within Ac3H11_385at 64.750 kb on - strand, within Ac3H11_385at 64.750 kb on - strand, within Ac3H11_385at 64.790 kb on + strand, within Ac3H11_385at 64.790 kb on + strand, within Ac3H11_385at 64.790 kb on + strand, within Ac3H11_385at 64.791 kb on - strand, within Ac3H11_385at 64.851 kb on + strand, within Ac3H11_385at 64.851 kb on + strand, within Ac3H11_385at 64.852 kb on - strand, within Ac3H11_385at 64.852 kb on - strand, within Ac3H11_385at 64.852 kb on - strand, within Ac3H11_385at 64.852 kb on - strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.914 kb on + strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 64.915 kb on - strand, within Ac3H11_385at 65.133 kb on - strandat 65.133 kb on - strandat 65.271 kb on + strandat 65.272 kb on - strandat 65.355 kb on - strand, within Ac3H11_386at 65.396 kb on - strand, within Ac3H11_386at 65.396 kb on - strand, within Ac3H11_386at 65.944 kb on + strand, within Ac3H11_386at 65.944 kb on + strand, within Ac3H11_386

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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63,605 + Ac3H11_384 0.25 +0.3
63,605 + Ac3H11_384 0.25 +0.9
63,742 + Ac3H11_384 0.38 +0.7
63,742 + Ac3H11_384 0.38 -0.8
63,742 + Ac3H11_384 0.38 +0.1
63,742 + Ac3H11_384 0.38 -0.3
63,743 - Ac3H11_384 0.38 -0.4
63,743 - Ac3H11_384 0.38 -1.7
63,743 - +0.4
63,743 - Ac3H11_384 0.38 +0.6
64,036 + Ac3H11_384 0.66 +1.0
64,140 - Ac3H11_384 0.76 -0.5
64,140 - Ac3H11_384 0.76 -0.1
64,277 + Ac3H11_384 0.89 -0.8
64,277 + Ac3H11_384 0.89 +2.0
64,277 + Ac3H11_384 0.89 +0.4
64,277 + Ac3H11_384 0.89 -0.7
64,278 - Ac3H11_384 0.90 +1.0
64,278 - Ac3H11_384 0.90 -0.2
64,278 - Ac3H11_384 0.90 -1.7
64,295 + -0.9
64,295 + -2.0
64,296 - -0.1
64,296 - -0.8
64,296 - -0.4
64,412 - -0.4
64,520 + Ac3H11_385 0.10 -1.1
64,520 + Ac3H11_385 0.10 +1.0
64,520 + Ac3H11_385 0.10 -0.3
64,521 - Ac3H11_385 0.10 +0.5
64,569 + Ac3H11_385 0.19 -0.2
64,569 + Ac3H11_385 0.19 +0.1
64,569 + Ac3H11_385 0.19 -0.2
64,569 + Ac3H11_385 0.19 +0.2
64,570 - Ac3H11_385 0.19 -0.3
64,570 - Ac3H11_385 0.19 -0.2
64,570 - Ac3H11_385 0.19 -0.5
64,684 + Ac3H11_385 0.39 +0.4
64,749 + Ac3H11_385 0.51 -0.1
64,749 + Ac3H11_385 0.51 +0.5
64,749 + Ac3H11_385 0.51 -0.1
64,750 - Ac3H11_385 0.51 +0.6
64,750 - Ac3H11_385 0.51 -0.2
64,750 - Ac3H11_385 0.51 +0.1
64,790 + Ac3H11_385 0.58 -2.1
64,790 + Ac3H11_385 0.58 -0.4
64,790 + Ac3H11_385 0.58 -0.4
64,791 - Ac3H11_385 0.58 -0.6
64,851 + Ac3H11_385 0.69 +0.7
64,851 + Ac3H11_385 0.69 +0.1
64,852 - Ac3H11_385 0.69 -0.1
64,852 - Ac3H11_385 0.69 -0.5
64,852 - Ac3H11_385 0.69 -0.5
64,852 - Ac3H11_385 0.69 -0.2
64,914 + Ac3H11_385 0.80 -0.3
64,914 + Ac3H11_385 0.80 -0.2
64,914 + Ac3H11_385 0.80 -0.5
64,914 + Ac3H11_385 0.80 +0.6
64,914 + Ac3H11_385 0.80 +1.1
64,914 + Ac3H11_385 0.80 +0.0
64,914 + Ac3H11_385 0.80 -0.5
64,914 + Ac3H11_385 0.80 +0.4
64,914 + Ac3H11_385 0.80 -0.3
64,914 + Ac3H11_385 0.80 -1.6
64,914 + Ac3H11_385 0.80 -0.2
64,915 - Ac3H11_385 0.81 +0.2
64,915 - Ac3H11_385 0.81 +1.1
64,915 - Ac3H11_385 0.81 +0.8
64,915 - Ac3H11_385 0.81 -0.4
64,915 - Ac3H11_385 0.81 +0.2
64,915 - Ac3H11_385 0.81 +0.9
64,915 - Ac3H11_385 0.81 +0.3
64,915 - Ac3H11_385 0.81 +1.2
64,915 - Ac3H11_385 0.81 -0.2
64,915 - Ac3H11_385 0.81 -1.0
64,915 - Ac3H11_385 0.81 +0.1
64,915 - Ac3H11_385 0.81 +0.0
64,915 - Ac3H11_385 0.81 -0.1
65,133 - +0.8
65,133 - +0.2
65,271 + +2.2
65,272 - +0.6
65,355 - Ac3H11_386 0.13 +2.0
65,396 - Ac3H11_386 0.15 +2.5
65,396 - Ac3H11_386 0.15 +1.2
65,944 + Ac3H11_386 0.45 +3.0
65,944 + Ac3H11_386 0.45 -1.4

Or see this region's nucleotide sequence