Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4119 and Shewana3_4120 overlap by 44 nucleotides Shewana3_4120 and Shewana3_R0141 are separated by 267 nucleotides Shewana3_R0141 and Shewana3_R0142 are separated by 173 nucleotides
Shewana3_4119: Shewana3_4119 - alpha/beta hydrolase fold (RefSeq), at 4,943,969 to 4,944,982
_4119
Shewana3_4120: Shewana3_4120 - diguanylate phosphodiesterase (RefSeq), at 4,944,939 to 4,947,389
_4120
Shewana3_R0141: Shewana3_R0141 - 5S ribosomal RNA (RefSeq), at 4,947,657 to 4,947,776
_R0141
Shewana3_R0142: Shewana3_R0142 - 23S ribosomal RNA (RefSeq), at 4,947,950 to 4,950,845
_R0142
Position (kb)
4944
4945
4946
4947
4948 Strain fitness (log2 ratio)
-1
0
1
2 at 4943.989 kb on - strand at 4943.997 kb on + strand at 4944.005 kb on - strand at 4944.045 kb on + strand at 4944.066 kb on + strand at 4944.077 kb on + strand, within Shewana3_4119 at 4944.385 kb on + strand, within Shewana3_4119 at 4944.459 kb on - strand, within Shewana3_4119 at 4945.000 kb on - strand at 4945.019 kb on - strand at 4945.212 kb on + strand, within Shewana3_4120 at 4945.266 kb on - strand, within Shewana3_4120 at 4945.277 kb on + strand, within Shewana3_4120 at 4945.378 kb on - strand, within Shewana3_4120 at 4945.448 kb on + strand, within Shewana3_4120 at 4945.448 kb on + strand, within Shewana3_4120 at 4945.604 kb on - strand, within Shewana3_4120 at 4945.760 kb on + strand, within Shewana3_4120 at 4945.946 kb on - strand, within Shewana3_4120 at 4946.108 kb on + strand, within Shewana3_4120 at 4946.176 kb on - strand, within Shewana3_4120 at 4946.381 kb on + strand, within Shewana3_4120 at 4946.442 kb on + strand, within Shewana3_4120 at 4946.450 kb on - strand, within Shewana3_4120 at 4946.658 kb on + strand, within Shewana3_4120 at 4946.658 kb on + strand, within Shewana3_4120 at 4946.666 kb on - strand, within Shewana3_4120 at 4946.666 kb on - strand, within Shewana3_4120 at 4946.666 kb on - strand, within Shewana3_4120 at 4946.716 kb on + strand, within Shewana3_4120 at 4946.967 kb on + strand, within Shewana3_4120
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 4,943,989 - -0.7 4,943,997 + -0.5 4,944,005 - -1.2 4,944,045 + +0.1 4,944,066 + -0.7 4,944,077 + Shewana3_4119 0.11 -0.4 4,944,385 + Shewana3_4119 0.41 -1.0 4,944,459 - Shewana3_4119 0.48 +0.4 4,945,000 - +0.0 4,945,019 - +1.0 4,945,212 + Shewana3_4120 0.11 -0.6 4,945,266 - Shewana3_4120 0.13 +2.0 4,945,277 + Shewana3_4120 0.14 -1.3 4,945,378 - Shewana3_4120 0.18 -0.6 4,945,448 + Shewana3_4120 0.21 +1.0 4,945,448 + Shewana3_4120 0.21 -0.3 4,945,604 - Shewana3_4120 0.27 -0.8 4,945,760 + Shewana3_4120 0.33 +1.0 4,945,946 - Shewana3_4120 0.41 -1.4 4,946,108 + Shewana3_4120 0.48 -0.6 4,946,176 - Shewana3_4120 0.50 +0.8 4,946,381 + Shewana3_4120 0.59 +0.0 4,946,442 + Shewana3_4120 0.61 +1.0 4,946,450 - Shewana3_4120 0.62 -1.0 4,946,658 + Shewana3_4120 0.70 -1.5 4,946,658 + Shewana3_4120 0.70 -0.4 4,946,666 - Shewana3_4120 0.70 -1.0 4,946,666 - Shewana3_4120 0.70 +0.0 4,946,666 - Shewana3_4120 0.70 -0.2 4,946,716 + Shewana3_4120 0.73 -1.0 4,946,967 + Shewana3_4120 0.83 -0.9
Or see this region's nucleotide sequence