Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4120

Experiment: Cholin acetate 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4119 and Shewana3_4120 overlap by 44 nucleotidesShewana3_4120 and Shewana3_R0141 are separated by 267 nucleotidesShewana3_R0141 and Shewana3_R0142 are separated by 173 nucleotides Shewana3_4119: Shewana3_4119 - alpha/beta hydrolase fold (RefSeq), at 4,943,969 to 4,944,982 _4119 Shewana3_4120: Shewana3_4120 - diguanylate phosphodiesterase (RefSeq), at 4,944,939 to 4,947,389 _4120 Shewana3_R0141: Shewana3_R0141 - 5S ribosomal RNA (RefSeq), at 4,947,657 to 4,947,776 _R0141 Shewana3_R0142: Shewana3_R0142 - 23S ribosomal RNA (RefSeq), at 4,947,950 to 4,950,845 _R0142 Position (kb) 4944 4945 4946 4947 4948Strain fitness (log2 ratio) -1 0 1 2at 4943.989 kb on - strandat 4943.997 kb on + strandat 4944.005 kb on - strandat 4944.045 kb on + strandat 4944.066 kb on + strandat 4944.077 kb on + strand, within Shewana3_4119at 4944.385 kb on + strand, within Shewana3_4119at 4944.459 kb on - strand, within Shewana3_4119at 4945.000 kb on - strandat 4945.019 kb on - strandat 4945.212 kb on + strand, within Shewana3_4120at 4945.266 kb on - strand, within Shewana3_4120at 4945.277 kb on + strand, within Shewana3_4120at 4945.378 kb on - strand, within Shewana3_4120at 4945.448 kb on + strand, within Shewana3_4120at 4945.448 kb on + strand, within Shewana3_4120at 4945.604 kb on - strand, within Shewana3_4120at 4945.760 kb on + strand, within Shewana3_4120at 4945.946 kb on - strand, within Shewana3_4120at 4946.108 kb on + strand, within Shewana3_4120at 4946.176 kb on - strand, within Shewana3_4120at 4946.381 kb on + strand, within Shewana3_4120at 4946.442 kb on + strand, within Shewana3_4120at 4946.450 kb on - strand, within Shewana3_4120at 4946.658 kb on + strand, within Shewana3_4120at 4946.658 kb on + strand, within Shewana3_4120at 4946.666 kb on - strand, within Shewana3_4120at 4946.666 kb on - strand, within Shewana3_4120at 4946.666 kb on - strand, within Shewana3_4120at 4946.716 kb on + strand, within Shewana3_4120at 4946.967 kb on + strand, within Shewana3_4120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
remove
4,943,989 - -0.7
4,943,997 + -0.5
4,944,005 - -1.2
4,944,045 + +0.1
4,944,066 + -0.7
4,944,077 + Shewana3_4119 0.11 -0.4
4,944,385 + Shewana3_4119 0.41 -1.0
4,944,459 - Shewana3_4119 0.48 +0.4
4,945,000 - +0.0
4,945,019 - +1.0
4,945,212 + Shewana3_4120 0.11 -0.6
4,945,266 - Shewana3_4120 0.13 +2.0
4,945,277 + Shewana3_4120 0.14 -1.3
4,945,378 - Shewana3_4120 0.18 -0.6
4,945,448 + Shewana3_4120 0.21 +1.0
4,945,448 + Shewana3_4120 0.21 -0.3
4,945,604 - Shewana3_4120 0.27 -0.8
4,945,760 + Shewana3_4120 0.33 +1.0
4,945,946 - Shewana3_4120 0.41 -1.4
4,946,108 + Shewana3_4120 0.48 -0.6
4,946,176 - Shewana3_4120 0.50 +0.8
4,946,381 + Shewana3_4120 0.59 +0.0
4,946,442 + Shewana3_4120 0.61 +1.0
4,946,450 - Shewana3_4120 0.62 -1.0
4,946,658 + Shewana3_4120 0.70 -1.5
4,946,658 + Shewana3_4120 0.70 -0.4
4,946,666 - Shewana3_4120 0.70 -1.0
4,946,666 - Shewana3_4120 0.70 +0.0
4,946,666 - Shewana3_4120 0.70 -0.2
4,946,716 + Shewana3_4120 0.73 -1.0
4,946,967 + Shewana3_4120 0.83 -0.9

Or see this region's nucleotide sequence